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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcctaatatctgaagccagaatttatcttttttgcccttattttactgcatagtgaataaggctgaaaagctctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG

Basic information

species Zea mays
transcript GRMZM2G051842_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051842_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g01620.1 (Oryza sativa), 3'ss of exon 2
gtagcctaatatctgaagccagaatttatc--ttttttgcccttattttactgcatagtgaataaggctgaaaagc---tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG
|||| |||| |||||||||||  || ||||  ||||||||||||||||| |||| ||||| |||||||||||||      |||||||||||||  |||||||| |||||||| ||||| ||||||||||| || ||||||||||| ||||||||| | |||
gtagtctaaaatctgaagccaatatctatctattttttgcccttattttgctgcttagtggataaggctgaaaataatacctattatagTGTGCATGCTTGGTCGATGCAAGTGGCAATCGCACCATGCGCCCTTGCCTATCTAGTGCAGTCAAGCTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28873329|gb|CB329332.1|CB329332
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGT
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGT
EST: gi|71446345|gb|DR827395.1|DR827395
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|91057161|gb|EB167579.1|EB167579
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAA-GGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|29543850|gb|CB604230.1|CB604230
EST:     GTGGTGTAGATCTCACAAGGNTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTG
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTG
EST: gi|76293563|gb|DV033131.1|DV033131
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|76286678|gb|DV026246.1|DV026246
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|71771409|gb|DR969346.1|DR969346
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|29946564|gb|CB816213.1|CB816213
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCG
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCG
EST: gi|148987163|gb|EE030992.2|EE030992
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|71447665|gb|DR828715.1|DR828715
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|28569018|gb|CB280893.1|CB280893
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|29946829|gb|CB816346.1|CB816346
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|149088934|gb|EE178077.2|EE178077
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|148959742|gb|EC905640.2|EC905640
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTA
EST: gi|31612068|gb|CD568690.1|CD568690
EST:     GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAG                         TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCC
genomic: GTGGTGTAGATCTCACAAGGTTAAGGGCCAAAAAAGGGCACACCGCTCAGgtagcctaat ... tctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttgcccttattttactgcatagtgaataaggctgaaaagctctattatagTGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG
                                            ctctatt  CT-rich tract
           ttattttact  TA-rich tract