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gtaagaatgcttctcgctgttattgtcgtgctgcgccagttcttagtttaattgctatataaggtagcaggtataagatattagcgcctcgtttcatgcagtaaagtgaaacagcgtagtgtttcaatctagtgctctatattttgttcagCACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAACTTCAAAGACCACCTCATACTTGGGGAGGAAGGCGGCCTTGTTGGAGATTCC
species | Zea mays |
transcript | GRMZM2G051276_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGTGTTGCAGACCTGGTGACAGA CACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTC-CCAAGAACTTEST: gi|211169546|gb|FL047612.1|FL047612
genomic: AAGGTGTTGCAGACCTGGTGACAGAgtaagaatgc ... ttttgttcagCACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAACTT
EST: AATAAGCCACGCAATATCCACTATAAAGGTGTTGCAGACCTGGTGACAGA CACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGEST: gi|19350800|gb|BM895332.1|BM895332
genomic: AATAAGCCACGCAATATCCACTATAAAGGTGTTGCAGACCTGGTGACAGAgtaagaatgc ... ttttgttcagCACAGACAAGTTGAGTGAATCAGTCATTTTGGAAG
EST: AATAAGCCACGCAATATCCACTATAAAGGTGTTGCAGACCTGGTGACAGA CACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAACTTEST: gi|211169549|gb|FL047615.1|FL047615
genomic: AATAAGCCACGCAATATCCACTATAAAGGTGTTGCAGACCTGGTGACAGAgtaagaatgc ... ttttgttcagCACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAACTT
EST: AATAAGCCACGCAATATCCACTATAAAGGTGTTGCAGACCTGGTGACAGA CACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAAACTEST: gi|89106256|gb|DY576473.1|DY576473
genomic: AATAAGCCACGCAATATCCACTATAAAGGTGTTGCAGACCTGGTGACAGAgtaagaatgc ... ttttgttcagCACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAA-CT
EST: AATAAGCCACGCAATATCCACTATAAAGGTGTTGCAGACCTGGTGACAGA CACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAACTTEST: gi|101394982|gb|EB819425.1|EB819425
genomic: AATAAGCCACGCAATATCCACTATAAAGGTGTTGCAGACCTGGTGACAGAgtaagaatgc ... ttttgttcagCACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAACTT
EST: AATAAGCCACGCAATATCCACTATAAAGGTGTTGCAGACCTGGTGACAGA CACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAACTT
genomic: AATAAGCCACGCAATATCCACTATAAAGGTGTTGCAGACCTGGTGACAGAgtaagaatgc ... ttttgttcagCACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAACTT
tgcagtaaagtgaaacagcgtagtgtttcaatctagtgctctatattttgttcagCACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAACTTCAAAGACCACCTCATACTTGGGGAGGAAGGCGGCCTTGTTGGAGATTCC
ttttgttc CT-rich tract
tatattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatgcttctcgctgttattgtcgtgctgcgccagttcttagtttaattgctatataaggtagcaggtataagatattagcgcctcgtttcatgcagtaaagtgaaacagcgtagtgtttcaatctagtgctctatattttgttcagCACAGACAAGTTGAGTGAATCAGTCATTTTGGAAGTTGTCACCAAGAACTTCAAAGACCACCTCATACTTGGGGAGGAAGGCGGCCTTGTTGGAGATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT