1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccacttctatttgtgcagtaatcttaccacagctgaattgatatctgatattctgatccaacttttcttattatgaacttattcctttccacttctacagGAAAATGGACACGATGAGATTAGTATCAAGGCCATGGGACAGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATTAAG
species | Zea mays |
transcript | GRMZM2G050982_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCAGGGGAGGATGAGGAACTATATCAGCTATGGGATGTCGCTGCTTGAG GAAAATGGACACGATGAGATTAGTATCAAGGCCATGGGACAGGCCATAAAT
genomic: CTCAGGGGAGGATGAGGAACTATATCAGCTATGGGATGTCGCTGCTTGAGgtgacatgct ... acttctacagGAAAATGGACACGATGAGATTAGTATCAAGGCCATGGGACAGGCCATAAAT
tgatattctgatccaacttttcttattatgaacttattcctttccacttctacagGAAAATGGACACGATGAGATTAGTATCAAGGCCATGGGACAGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATTAAG
ttctgat putative branch site (score: 77)
cttattcctttccact putative PPT
ttttcttattatgaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacttctatttgtgcagtaatcttaccacagctgaattgatatctgatattctgatccaacttttcttattatgaacttattcctttccacttctacagGAAAATGGACACGATGAGATTAGTATCAAGGCCATGGGACAGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATTAAG
ccacttc
- - - - - -tgtgcag
- - - - - - - - - - - - - - acagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgatcc