1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaatgcacatgtgtctgctgaagtttttagaagttgatagtttgatataattgattgttctgagttctgagtttctgacaaaactgttttattcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG
species | Zea mays |
transcript | GRMZM2G050961_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|13558000|gb|BG549356.1|BG549356
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: AGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|148943634|gb|EC888698.2|EC888698
genomic: AGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|211482968|gb|FK973427.1|FK973427
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|15198996|gb|BI423600.1|BI423600
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTGTTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|13558001|gb|BG549357.1|BG549357
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTEST: gi|148943633|gb|EC888697.2|EC888697
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGT
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|211485846|gb|FK973438.1|FK973438
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGNGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|29577011|gb|CB617123.1|CB617123
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|211061029|gb|FL204116.1|FL204116
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|6342692|gb|AW165516.1|AW165516
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: CCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|29167933|gb|CB411193.1|CB411193
genomic: CCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|15499585|gb|BI596098.1|BI596098
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTGTTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|19058714|gb|BM737381.1|BM737381
genomic: TCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTGTTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|13382241|gb|BG458916.1|BG458916
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|161588442|gb|EY958454.1|EY958454
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: CGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTGTTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|29947167|gb|CB816515.1|CB816515
genomic: CGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|13382242|gb|BG458917.1|BG458917
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|211058063|gb|FL204109.1|FL204109
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|32849976|gb|CD989657.1|CD989657
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTGTTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|13558470|gb|BG549826.1|BG549826
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|13237244|gb|BG355258.1|BG355258
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|29544990|gb|CB605168.1|CB605168
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|26559456|gb|CA831691.1|CA831691
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
genomic: TGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGgtctctccgc ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
tataattgattgttctgagttctgagtttctgacaaaactgttttattcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG
ttctgac putative branch site (score: 411)
ttttattc putative PPT
aaaactgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgcacatgtgtctgctgaagtttttagaagttgatagtttgatataattgattgttctgagttctgagtttctgacaaaactgttttattcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT