ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...agcttactttctttttttaatgaactatttttggctcaattgttctgattgaaccttcaactgtatttggtggcaatgattgaccatctataatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG

Basic information

species	Zea mays
transcript	GRMZM2G050467_T01
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g43540.1 (Oryza sativa), 3'ss of exon 2

--agcttactttctttttttaatg-aactatttttggctcaattgttctgattgaaccttcaactgtatttggtggcaatgattgaccatctataatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG
   ||| | ||  ||| |  |    | |||| |     |  ||  ||   |||  |  | ||||   || |  |     ||| | |     |    |||| ||||||| ||||| |||||||||||||| |||||||| |||||||||||| |||| ||||| |  || || || ||||||||||| || ||||| || || |
tttgctgagttggtttctccatcatagctatatc--atttgatgcttggcattttatatgcaacaa-atatcttaaatttgagtaatgggttgatgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAGGATGGCCTCCGCGAGCTGGAGGAGGCTGAGATCGACGAGTACGTGGCTG

upper sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G23580.1 (Glycine max), 3'ss of exon 2

agcttactttctttttttaatga-actatttttggct--caattgttctgattgaaccttcaactgtatttggtggcaatgattgaccatctataatct--ctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG
     | |    ||   |||| | | ||||| ||  |   ||| | |     ||   ||  |   | || || |    ||  || ||  |  |   | |   ||||||||||||||||| || |||||||||||  |||| ||||||||  | ||| | || || | | |||| || || || || |||||||     ||||| |
-----attcctgttgcataattacagtatttctgtttgctaatagcttgttatgcgtctcaacaggaatatgtttaatatacttcacttttgactttttaattagGTTGTTGAGAGTGGAGGGAAGAACATAGAAGTTGCGGTGATGACTAAGGAGCAGGGTCTGCGTCAACTGGAGGAAGCCGAAATTGATGCCATCGTTGCTG

upper sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv03s0038g02300.t01 (Vitis vinifera), 3'ss of exon 2

agcttactttctttttttaatgaactatttttggctcaattgtt-----ctgattgaaccttcaactgtatttggtggcaatgattga-ccatctataatctc---tagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG
         || | |   |   ||   | |||   || ||   |     || || |   ||||   || || ||     |    ||||  ||| | |    ||   ||||||||||||||||| || || |||||||||||||| ||||||||  | ||| | ||  | |   |||| ||||| |||||||||||||    |||||| |
--------atcatgtccaagaaaagcctgtttaattctataacttatccctcatggttgcttcttttg-atctgactttagcttttgagtcatgttttgcttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTG

upper sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv04s0023g03690.t01 (Vitis vinifera), 3'ss of exon 2

------agcttactttctttttttaatgaactatttttggctcaattgttctgattgaaccttcaactgtatttggtggcaatgattgaccatctataatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG
      |||  | ||   |  |||  |  |  ||  || |  || ||||     ||||      ||   ||  |  |||||    ||  |    ||| |  | ||||| ||||||||||| || ||||||||||| ||||| ||||||||    ||| | || || |   |||| || |||||||| |||||||    |||||| |
tggggtagcg-agttgagtgatttggt--atgatggtttgtacatttgtatatcttgatttcagaagcataacttttggcatgtgttatc---ttattacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAGCATGGTCTGCGGCAACTTGATGAGGCTGAAATTGATGCCATTGTTGCTG

upper sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ31080 (Selaginella moellendorffii), 3'ss of exon 2

agcttactttctttttttaatgaactatttttggctcaattgttctgattgaaccttcaactgtatttggtggcaatgattg--accatctataatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG---
                                         ||    |  ||   ||  |  |   ||  |   ||   |||  ||         ||| |||||||| ||||| |||||||||||||| ||||| || ||||||||   |    | || ||  |    || || ||| | ||||| || |||  ||||  ||   
-----------------------------------------gtaagcaaagagttttggatcgcgctttctctaaacttttggaacttgtctgggtctatagGTTGTGGAGAGCGGTGGCAAGAACATCGAGATCGCTGTGATGAC---CAGACAAGGGCTCAAATTGCTGGAGGAGCCCGAGATCGAAGAGATTGTTAACGGGA

upper sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ34636 (Selaginella moellendorffii), 3'ss of exon 2

agcttactttctttttttaatgaactatttttggctcaattgttctgattgaaccttcaactgtatttggtggcaatgattgaccatctataatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGAC-ACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG---
                               |     ||  ||| ||  |    ||||    | || ||     ||   |||    ||     ||| |||||||| ||||| |||||||||||||| ||||| || |||||||| | || ||||| |   |      || || ||| | ||||| || |||  ||||  ||   
------------------------------gtaagcaaagagttttggattgcgcttctctcggatctgtc--taacttttggaactcgtgggtctatagGTTGTGGAGAGCGGTGGCAAGAACATCGAGATCGCTGTGATGACCAGACAAGGACTGAAATTG----CTGGAGGAGCCCGAGATCGAAGAGATTGTTAACGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|15057302|gb|BI361274.1|BI361274

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|71768708|gb|DR966645.1|DR966645

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|29946304|gb|CB816082.1|CB816082

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|18180506|gb|BM381716.1|BM381716

EST:     GGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: GGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|18384070|gb|BM417270.1|BM417270

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|148934351|gb|EC878380.2|EC878380

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|148963717|gb|EE014787.2|EE014787

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|60343302|gb|DN210275.1|DN210275

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|16925449|gb|BM078517.1|BM078517

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|22472569|gb|BU037049.1|BU037049

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GGTGTTGAGAGTGGTGGCAAGAACATAGAGATTG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTG

EST: gi|31360022|gb|CD444379.1|CD444379

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|4688507|gb|AI637177.1|AI637177

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|31355408|gb|CD439765.1|CD439765

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|6681824|gb|AW287811.1|AW287811

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|78075768|gb|DV504202.1|DV504202

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|78090575|gb|DV518949.1|DV518949

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|148949058|gb|EC894481.2|EC894481

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|16746151|gb|BM032581.1|BM032581

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|78090574|gb|DV518948.1|DV518948

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|211315243|gb|FL162185.1|FL162185

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACAT
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACAT

EST: gi|76020388|gb|DT947558.1|DT947558

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|78022024|gb|DV490411.1|DV490411

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|148949059|gb|EC894482.2|EC894482

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|213191090|gb|FM185030.1|FM185030

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|29946508|gb|CB816184.1|CB816184

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|16816863|gb|BM056072.1|BM056072

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|16816861|gb|BM056071.1|BM056071

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|148963265|gb|EE014254.2|EE014254

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

EST: gi|91052252|gb|EB162670.1|EB162670

EST:     AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAG                         GTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG
genomic: AGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 133

CGGCCGCAACTCCAACTCCATGCGCGAGTTTCTCGAGAAGAATTACAAGGAGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactc ... taatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 189

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 223

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 178

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

tgattgaaccttcaactgtatttggtggcaatgattgaccatctataatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG

                                gattgac  putative branch site (score: 178)
                                                tctct  putative PPT
                                        atctataat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agcttactttctttttttaatgaactatttttggctcaattgttctgattgaaccttcaactgtatttggtggcaatgattgaccatctataatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgattg