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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaatttcttgtttcttttgctctttattgcgctttgctctctctctctccctctttatatttcagctaatacactgaaacatggttcaatctagagcagcagcatattttaggtgttcttttttgtactaatcttggtcattttttagGCTACCACAGATGGGAATAATGCTAATGGACAACCATTGCTTGTCAATGATCAGAACAAATATAAATCAATGCTTACCCATACGTATTCTACAGTATGGA

Basic information

species Zea mays
transcript GRMZM2G049447_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049447_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g55360.4 (Oryza sativa), 3'ss of exon 2
gttagtaatttcttgtttcttttgctctttattgcgctttgctctctctctctccctctttatatttcagctaatacactgaaacatggttcaatctagagcagcagcatattttaggtgttcttttttgtactaatcttggtcatttt--ttagGCTACCACAGATGGGAATAATGCTAATGGACAACCATTGCTTGTCAATGATCAGAACAAATATAAATCAATGCTTACCCATACGTATTCTACAGTATGGA
                                                        ||  |  |        |  |  |  |   |  |    | || |    |    | |  |         ||||| |  || ||      | ||||  | |||||||  ||||||||||||   | ||||||| | | |||||||||||||||||||| || || || |||||||||| || ||| ||||||||||||||||
-------------------------------------------------------gtcactgaaacaggagcacgatgcaaagctaaagcaacaacttgttttgtgttacacctggcacacattttttggagcttattgatacctttttgttcagGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagcagcagcatattttaggtgttcttttttgtactaatcttggtcattttttagGCTACCACAGATGGGAATAATGCTAATGGACAACCATTGCTTGTCAATGATCAGAACAAATATAAATCAATGCTTACCCATACGTATTCTACAGTATGGA
                                tactaat  putative branch site (score: 1)
                                            tcatttttt  putative PPT
                         ttttttgtactaat  TA-rich tract