1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagaatttcccggcaccatgtacgcatgcgatgcgatgtgtgtgactgctgggcggtcgtttctgcttcgccgcgctccggttccctgaccttgactggcatcgtgtgtgtgtgtgcatggttcgtgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAGGCCGGACCTCAAGAGGGGCCTGCTCTCCGACGACGAGGAGAGGCTCGT
species | Zea mays |
transcript | GRMZM2G048910_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAC GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|211063763|gb|FL078036.1|FL078036
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAG GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|67021186|gb|CO449935.1|CO449935
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAG GGTTACTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|211063761|gb|FL078034.1|FL078034
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAG GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|211063764|gb|FL078037.1|FL078037
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAG GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|211063762|gb|FL078035.1|FL078035
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAC GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|211063766|gb|FL078039.1|FL078039
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAC GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|148958717|gb|EC904989.2|EC904989
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAG GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|76934017|gb|DV173689.1|DV173689
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAG GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|211063767|gb|FL078040.1|FL078040
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAG GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|211063760|gb|FL078033.1|FL078033
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTTCTGGCGCGTCGTCCCCAAGCTCGCAG GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|149085462|gb|EE174968.2|EE174968
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAG GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAEST: gi|211063759|gb|FL078032.1|FL078032
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
EST: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAG GGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
genomic: CCTCCTCACCCACGGTCACTGCTGCTGGCGCGTCGTCCCCAAGCTCGCAGgtgagaattt ... tgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaatttcccggcaccatgtacgcatgcgatgcgatgtgtgtgactgctgggcggtcgtttctgcttcgccgcgctccggttccctgaccttgactggcatcgtgtgtgtgtgtgcatggttcgtgcgctgcagGGTTGCTGAGGTGCGGGAAGAGCTGCAGGCTGCGGTGGACCAACTACCTGAGGCCGGACCTCAAGAGGGGCCTGCTCTCCGACGACGAGGAGAGGCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG