Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtctctcggatggctgtagttgatgggggagattcctaacttcagttcagctgactgctgtttccttttgaatacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTGCCGAGCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCT

Basic information

species Zea mays
transcript GRMZM2G048703_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048703_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g15590.1 (Oryza sativa), 3'ss of exon 2
gtgtgtctctcggatggctgtagttgatgggggagattcctaacttcag---ttcagct--gactgctgtttccttttgaatact-----tgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTGCCGAGCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCT
  ||   || | |     |    ||| |||||    |  |||| |||||   | ||| |  || ||||| | |  ||||  |        || |||| || ||||||||||||||||||||||||||  |||| ||   |  ||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||
--gtacgtcaccgcgaatttcttttggtggggat--tctctaatttcagggctgcagattggattgctgatgctgtttgggtgtcctgtatgtagGTTGAGTCGTTCTGGGTTTGCTACTGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211257254|gb|FK964960.1|FK964960
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118686|gb|FK964926.1|FK964926
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGC-ACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|89760551|gb|DY688915.1|DY688915
EST:     CATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGGTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: CATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119484|gb|FK964938.1|FK964938
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|148936054|gb|EC880114.2|EC880114
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|87153049|gb|DY397838.1|DY397838
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|6445424|gb|AW179492.1|AW179492
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119483|gb|FK964937.1|FK964937
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254819|gb|FK964954.1|FK964954
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211257255|gb|FK964961.1|FK964961
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119475|gb|FK964929.1|FK964929
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCAACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|74232667|gb|DT640581.1|DT640581
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119482|gb|FK964936.1|FK964936
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254812|gb|FK964947.1|FK964947
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|28361610|gb|CB239966.1|CB239966
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|93012199|gb|EB637719.1|EB637719
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254818|gb|FK964953.1|FK964953
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|31612425|gb|CD569047.1|CD569047
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|71327672|gb|DR800450.1|DR800450
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211257256|gb|FK964962.1|FK964962
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|91053786|gb|EB164204.1|EB164204
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254816|gb|FK964951.1|FK964951
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGC-ACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254820|gb|FK964955.1|FK964955
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCSCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|14245305|gb|BG873887.1|BG873887
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118679|gb|FK964919.1|FK964919
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254811|gb|FK964946.1|FK964946
EST:     GTCGCAGTCGTACGAGGACAACATCAAGAAGTATCATCGATTTCAGCACA                         GTCGAATCGGTTCTGGGTTTGCTACTGCCACCTTGCGCGACCTTCTTCCCT
genomic: GTCGCAGTCGTACGAGGACAACATCAAGAAG-ATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCG-TTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCT
EST: gi|74232666|gb|DT640580.1|DT640580
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|19058335|gb|BM737002.1|BM737002
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119478|gb|FK964932.1|FK964932
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|60351308|gb|DN218281.1|DN218281
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118683|gb|FK964923.1|FK964923
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATNCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCT
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAAT-CGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCT
EST: gi|211254810|gb|FK964945.1|FK964945
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTC
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTC
EST: gi|211118678|gb|FK964918.1|FK964918
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGC-ACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118684|gb|FK964924.1|FK964924
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254809|gb|FK964944.1|FK964944
EST:     GGTCGCAGTCNTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211257253|gb|FK964959.1|FK964959
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119488|gb|FK964942.1|FK964942
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118674|gb|FK964914.1|FK964914
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|78088649|gb|DV517042.1|DV517042
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119485|gb|FK964939.1|FK964939
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254822|gb|FK964957.1|FK964957
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254814|gb|FK964949.1|FK964949
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118682|gb|FK964922.1|FK964922
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|78088650|gb|DV517043.1|DV517043
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119477|gb|FK964931.1|FK964931
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|31349975|gb|CD434332.1|CD434332
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254821|gb|FK964956.1|FK964956
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119481|gb|FK964935.1|FK964935
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119487|gb|FK964941.1|FK964941
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118677|gb|FK964917.1|FK964917
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|28361792|gb|CB240148.1|CB240148
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|149070116|gb|EE158515.2|EE158515
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119476|gb|FK964930.1|FK964930
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254808|gb|FK964943.1|FK964943
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118676|gb|FK964916.1|FK964916
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|89760553|gb|DY688916.1|DY688916
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254813|gb|FK964948.1|FK964948
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGC-ACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|149005273|gb|EE039821.2|EE039821
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119474|gb|FK964928.1|FK964928
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211257252|gb|FK964958.1|FK964958
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118680|gb|FK964920.1|FK964920
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118681|gb|FK964921.1|FK964921
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGC-ACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|8368073|gb|BE051018.1|BE051018
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|31612426|gb|CD569048.1|CD569048
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|32834070|gb|CD973748.1|CD973748
EST:     AGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: AGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118685|gb|FK964925.1|FK964925
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211119479|gb|FK964933.1|FK964933
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGC-ACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|22490736|gb|BU050659.1|BU050659
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211118675|gb|FK964915.1|FK964915
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
EST: gi|211254817|gb|FK964952.1|FK964952
EST:     GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA                         GTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG
genomic: GGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACAgtgtgtctct ... atacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggagattcctaacttcagttcagctgactgctgtttccttttgaatacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTGCCGAGCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCT
                                       ttttgaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtgtctctcggatggctgtagttgatgggggagattcctaacttcagttcagctgactgctgtttccttttgaatacttgaagGTCGAATCGTTCTGGGTTTGCTACTGCCACCTTGCGCGCCCTTCTTCCCTGCCGAGCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG