1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agatcatctatcggtgactatagtgcaggctagctcattgattgattgattgatctagtggactagtgcgatatgatatgatatgctctctctgcttcagGTCCGAACTATCAAGGTGACCAACGTGCCTCTCTCGGCGACCGCGGAGAACATGAAGGAGTTCTTCTCCTTCTCCGGCGAGATCGAGTACGTCGAGATGC
species | Zea mays |
transcript | GRMZM2G048584_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATYACCACAGCTCTGCACTTCCCCAAACTGGACCATCGATGTCTCGGAC GTCCGAACTATCAAGGTGACCAACGTGCCTCTCTCGGCGACCGCGGAGAAC
genomic: C---ACCACAGCTCTGCACTTCCCCAAACTGGACCATCGATGTCTCGGACgtgagtcgga ... tctgcttcagGTCCGAACTATCAAGGTGACCAACGTGCCTCTCTCGGCGACCGCGGAGAAC
ttgattgatctagtggactagtgcgatatgatatgatatgctctctctgcttcagGTCCGAACTATCAAGGTGACCAACGTGCCTCTCTCGGCGACCGCGGAGAACATGAAGGAGTTCTTCTCCTTCTCCGGCGAGATCGAGTACGTCGAGATGC
gattgat putative branch site (score: 126)
tgctctctctgcttc putative PPT
atatgatatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatcatctatcggtgactatagtgcaggctagctcattgattgattgattgatctagtggactagtgcgatatgatatgatatgctctctctgcttcagGTCCGAACTATCAAGGTGACCAACGTGCCTCTCTCGGCGACCGCGGAGAACATGAAGGAGTTCTTCTCCTTCTCCGGCGAGATCGAGTACGTCGAGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - -tgcaggc
- - - - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctagtgc