1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcttttggcaattactttatcatacacactcttcgcctattttgacttttttctaatcctgtagttgtctgtaacagttataatcttattattatgcagCTCTCCGTTGGAGGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGGTGATAGCGATGAAGATGAACCAGCTCCATATCGTGTTCGCCATGAAATC
species | Zea mays |
transcript | GRMZM2G048494_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTGGAGCTCAAGAAGACGAGGAACCTCGCCAAACAAGGAAACAAAG CTCTCCGTTGGAGGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGGEST: gi|4646644|gb|AI491477.2|AI491477
genomic: GCTGCTGGAGCTCAAGAAGACGAGGAACCTCGCCAAACAAGGAAACAAAGgttagtcggg ... tattatgcagCTCTCCGTTGGAGGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGG
EST: GCTGCTGGAGCTCAAGAAGACGAGGAACCTCGCCAAACAAGGAAACAAAG CTCTCCGTTGGAGGAAGAEST: gi|149041296|gb|EE046932.2|EE046932
genomic: GCTGCTGGAGCTCAAGAAGACGAGGAACCTCGCCAAACAAGGAAACAAAGgttagtcggg ... tattatgcagCTCTCCGTTGGAGGAAGA
EST: GCTGCTGGAGCTCAAGAAGACGAGGAACCTCGCCAAACAAGGAAACAAAG CTCTCCGTTGGAGGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGGEST: gi|32823050|gb|CD962759.1|CD962759
genomic: GCTGCTGGAGCTCAAGAAGACGAGGAACCTCGCCAAACAAGGAAACAAAGgttagtcggg ... tattatgcagCTCTCCGTTGGAGGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGG
EST: GCTGCTGGAGCTCAAGAAGACGAGGAACCTCGCCAAACAAGGAAACAAAG CTCTCCGTTGGAGGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGG
genomic: GCTGCTGGAGCTCAAGAAGACGAGGAACCTCGCCAAACAAGGAAACAAAGgttagtcggg ... tattatgcagCTCTCCGTTGGAGGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGG
acttttttctaatcctgtagttgtctgtaacagttataatcttattattatgcagCTCTCCGTTGGAGGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGGTGATAGCGATGAAGATGAACCAGCTCCATATCGTGTTCGCCATGAAATC
tcttatt CT-rich tract
taacagttataatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttttggcaattactttatcatacacactcttcgcctattttgacttttttctaatcctgtagttgtctgtaacagttataatcttattattatgcagCTCTCCGTTGGAGGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGGTGATAGCGATGAAGATGAACCAGCTCCATATCGTGTTCGCCATGAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC