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gtacgttcaggatccagactggtagctaatgggctatgtgaccatcatttgtttgtgtccggcaacaatcaatacatacgggaaatatatgttctttcagcagttctgatatatatatatatatatagtatcaaattgatgtatgtgcagGTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG
species | Zea mays |
transcript | GRMZM2G047867_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATGATACTGTGGTTTCAGGGTGGTTCACGGAACCCAGATCGCGTTTTG GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTGEST: gi|32919513|gb|CF024325.1|CF024325
genomic: CCATGATACTGTGGTTTCAGGGTGGTTCACGGAACCCAGATCGCGTTTTGgtacgttcag ... gtatgtgcagGTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG
EST: CCATGATACTGTGGTTTCAGGGTGGTTCACGGAACCCAGATCGCGTTTTG GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTGEST: gi|24934961|gb|BQ619375.2|BQ619375
genomic: CCATGATACTGTGGTTTCAGGGTGGTTCACGGAACCCAGATCGCGTTTTGgtacgttcag ... gtatgtgcagGTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG
EST: CCATGATACTGTGGTTTCAGGGTGGTTCACGGAACCCAGATCGCGTTTTG GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTGEST: gi|88757557|gb|DY541698.1|DY541698
genomic: CCATGATACTGTGGTTTCAGGGTGGTTCACGGAACCCAGATCGCGTTTTGgtacgttcag ... gtatgtgcagGTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG
EST: CCATGATACTGTGGTTTCAGGGTGGTTCACGGAACCCAGATCGCGTTTTG GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG
genomic: CCATGATACTGTGGTTTCAGGGTGGTTCACGGAACCCAGATCGCGTTTTGgtacgttcag ... gtatgtgcagGTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG
ttcagcagttctgatatatatatatatatatagtatcaaattgatgtatgtgcagGTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG
tgatatatatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttcaggatccagactggtagctaatgggctatgtgaccatcatttgtttgtgtccggcaacaatcaatacatacgggaaatatatgttctttcagcagttctgatatatatatatatatatagtatcaaattgatgtatgtgcagGTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG