1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggaagatgatttgcattgatggctgaaagtagtttgcattcctttgttttaagtatttctgttgcatagatcactaacaagttccctaatgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAACCTTATATATGCTTGATGGATGGAGTGACAATGGGATTTGGAATTGGGC
species | Zea mays |
transcript | GRMZM2G047564_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAGTGTATTCTTGTGGAAAGCAGCTCTTCTCGTGCCTTCTCAGCAG GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAAEST: gi|211063902|gb|FL196766.1|FL196766
genomic: TGTCAAGTGTATTCTTGTGGAAAGCAGCTCTTCTCGTGCCTTCTCAGCAGgtgattctta ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: TGTCAAGTGTATTCTTGTGGAAAGCAGCTCTTCTCGTGCCTTCTCAGCAG GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: TGTCAAGTGTATTCTTGTGGAAAGCAGCTCTTCTCGTGCCTTCTCAGCAGgtgattctta ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
tgttttaagtatttctgttgcatagatcactaacaagttccctaatgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAACCTTATATATGCTTGATGGATGGAGTGACAATGGGATTTGGAATTGGGC
tgcttttc CT-rich tract
taagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaagatgatttgcattgatggctgaaagtagtttgcattcctttgttttaagtatttctgttgcatagatcactaacaagttccctaatgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAACCTTATATATGCTTGATGGATGGAGTGACAATGGGATTTGGAATTGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA