1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcttctctaaaccattcataaatcatgtacatctgcaggaactctcagctaatggtacactgtttacttcttgttattgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGGCTAGGAAGGAGGAAGCTCGTAGACAGGAACTTGAG
species | Zea mays |
transcript | GRMZM2G047509_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|94478836|gb|EB707794.1|EB707794
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|44900751|gb|CK827296.1|CK827296
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCCGAGEST: gi|211206710|gb|FL036114.1|FL036114
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|32866858|gb|CF006540.1|CF006540
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|16377746|gb|BI992098.1|BI992098
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|211206707|gb|FL036111.1|FL036111
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCEST: gi|16927681|gb|BM080750.1|BM080750
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGC
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|148965768|gb|EE016647.2|EE016647
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|211206702|gb|FL036106.1|FL036106
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTEST: gi|13126108|gb|BG316558.1|BG316558
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCT
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|14243915|gb|BG841647.2|BG841647
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|211206704|gb|FL036108.1|FL036108
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|211206709|gb|FL036113.1|FL036113
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCT-CTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCARAGAAACGCAAGGTCCGAGEST: gi|16925125|gb|BM078193.1|BM078193
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|16918056|gb|BM073556.1|BM073556
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTTTGAG
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
atctgcaggaactctcagctaatggtacactgtttacttcttgttattgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGGCTAGGAAGGAGGAAGCTCGTAGACAGGAACTTGAG
agctaat putative branch site (score: 3)
ttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttctctaaaccattcataaatcatgtacatctgcaggaactctcagctaatggtacactgtttacttcttgttattgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGGCTAGGAAGGAGGAAGCTCGTAGACAGGAACTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA