1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcttctctaaaccattcataaatcatgtacatctgcaggaactctcagctaatggtacactgtttacttcttgttattgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGGCTAGGAAGGAGGAAGCTCGTAGACAGGAACTTGAG
species | Zea mays |
transcript | GRMZM2G047509_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|211206702|gb|FL036106.1|FL036106
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTEST: gi|211206707|gb|FL036111.1|FL036111
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCT
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCEST: gi|32827844|gb|CD967522.1|CD967522
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGC
EST: GATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGEST: gi|211206703|gb|FL036107.1|FL036107
genomic: GATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
EST: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCG GTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
genomic: AAGCTGTTCAAGCTGCTACAGATCTCATCGGGGAAGCCTTTATCTTCTCGgtgcttctct ... attgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAG
atctgcaggaactctcagctaatggtacactgtttacttcttgttattgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGGCTAGGAAGGAGGAAGCTCGTAGACAGGAACTTGAG
agctaat putative branch site (score: 81)
ttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttctctaaaccattcataaatcatgtacatctgcaggaactctcagctaatggtacactgtttacttcttgttattgtcatagGTCGCTGTTGCTGCTCTAATTTTTGAGGTTCAGAGAAACGCAAGGTCTGAGGCTAGGAAGGAGGAAGCTCGTAGACAGGAACTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA