1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggtttttttgtctatcttgtttatgaggcgctctttggattctacctgctgttcgtaatgatgtcctaaactatgctgtaaattaaactgctatttgcagCTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCTAGCAGAGACTACAACGTTGATATGGTTCCAAAG
species | Zea mays |
transcript | GRMZM2G047431_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAG CTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCTEST: gi|110506044|gb|EE017844.1|EE017844
genomic: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAGgtgacaatgc ... ctatttgcagCTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCT
EST: CAGGAATGACTACTACGGCGGAGACTCCACATCGCCTCAATCTCAATCAG CTCTGGAAACGEST: gi|33771056|gb|CF273350.1|CF273350
genomic: CAGGAATGACTACTACGGCGGAGACTCCACATCGC-TCAATCTCAATCAGgtgacaatgc ... ctatttgcagCTCTGGAAACG
EST: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAG CTCTGGAAACGGTTCAAGGGTGAANAAACACCGCCTGCGCACATAGGAGCTEST: gi|211323781|gb|FL062365.1|FL062365
genomic: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAGgtgacaatgc ... ctatttgcagCTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCT
EST: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAG CTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCTEST: gi|148960309|gb|EE153565.2|EE153565
genomic: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAGgtgacaatgc ... ctatttgcagCTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCT
EST: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAG CTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCTEST: gi|211323782|gb|FL062366.1|FL062366
genomic: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAGgtgacaatgc ... ctatttgcagCTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCT
EST: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAG CTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCTEST: gi|37621893|gb|CF674946.1|CF674946
genomic: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAGgtgacaatgc ... ctatttgcagCTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCT
EST: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAG CTCTGGAAGCGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCT
genomic: ACAGGAATGACTACTACGGCGGAGACTCCACATCGCTCAATCTCAATCAGgtgacaatgc ... ctatttgcagCTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCT
ctgctgttcgtaatgatgtcctaaactatgctgtaaattaaactgctatttgcagCTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCTAGCAGAGACTACAACGTTGATATGGTTCCAAAG
tcctaaa putative branch site (score: 116)
tgtaaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttttttgtctatcttgtttatgaggcgctctttggattctacctgctgttcgtaatgatgtcctaaactatgctgtaaattaaactgctatttgcagCTCTGGAAACGGTTCAAGGGTGAAGAAACACCGCCTGCGCACATAGGAGCTAGCAGAGACTACAACGTTGATATGGTTCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - -cttgttt
- - - - - - - - - - - - - - - - - - - - - - - -gctgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctg