1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttaatggatgtagtattttatctatctatttatttatttattttgtgatgggttgttttgtttgtgagcatgtcctttacttcacttgttatatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAGATGCAGTTGATCGCTTGAGAAGTATTGAGCGTTTCTTTAGTTCAAATC
species | Zea mays |
transcript | GRMZM2G046590_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|71438744|gb|DR819794.1|DR819794
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211425857|gb|FL143030.1|FL143030
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211425849|gb|FL143022.1|FL143022
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG G-AGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211428442|gb|FL143033.1|FL143033
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|160481670|gb|EY254240.1|EY254240
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211425850|gb|FL143023.1|FL143023
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211425855|gb|FL143028.1|FL143028
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|60358995|gb|DN225968.1|DN225968
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|149098030|gb|EE183977.2|EE183977
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGCGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|148983420|gb|EE029420.2|EE029420
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211425851|gb|FL143024.1|FL143024
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|149103987|gb|EE289410.2|EE289410
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211425859|gb|FL143032.1|FL143032
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|78117266|gb|DV535653.1|DV535653
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211425854|gb|FL143027.1|FL143027
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211428443|gb|FL143034.1|FL143034
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211425856|gb|FL143029.1|FL143029
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211425853|gb|FL143026.1|FL143026
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|211425852|gb|FL143025.1|FL143025
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGACCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|149089875|gb|EE179160.2|EE179160
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|149088666|gb|EE177784.2|EE177784
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAEST: gi|149090520|gb|EE179830.2|EE179830
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
EST: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAG GCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
genomic: CGCTGCGCTCCGCGGATGTGATCCTCACCCAGTTCGACAGGACCCGAGAGgtgcttcctc ... atatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTA
tgatgggttgttttgtttgtgagcatgtcctttacttcacttgttatatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAGATGCAGTTGATCGCTTGAGAAGTATTGAGCGTTTCTTTAGTTCAAATC
ttgttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatggatgtagtattttatctatctatttatttatttattttgtgatgggttgttttgtttgtgagcatgtcctttacttcacttgttatatgtacagGCAGAGCGTGAAATACAGAAGGGGCCGCATGAGAACCTTCAAGGTTTCCTAGATGCAGTTGATCGCTTGAGAAGTATTGAGCGTTTCTTTAGTTCAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -atggatg
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- - - - - - - - - - - - - - - - - - - - - - - - - -gttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
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