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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaaacacttcttccctcatcaaggacatgctcccctcattttgctatcctttgtttcatagactatgatattgtcacctttgcattccctgattccctcatggcgtaagaatatcaaattgcactagtgctctgctctataagcgatttgctgttttgtatttcccttaccgtgtacactttcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT

Basic information

species Zea mays
transcript GRMZM2G046587_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74244615|gb|DT652529.1|DT652529
EST:     CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAG                         GACCAGGGGCTCCTGAATTCTTCAATTGT
genomic: CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
EST: gi|211349013|gb|FL190902.1|FL190902
EST:     CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAG                         GACCAGGGGCTCCTGAATTCTTCAATTGT
genomic: CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
EST: gi|211351406|gb|FL190903.1|FL190903
EST:     ATGTCCCAGAAACATGTTGCTGCTCACCCATGGCANTGATTTGGAGATAG                         GACCAGGGGCTCCTGAATTCTTCAATTGT
genomic: ATGTCCCAGAAACATGTTGCTGCTCACCCATGGCA-TGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
EST: gi|9732830|gb|BE511582.1|BE511582
EST:     ATGA-TTGGAGATAG                         GACCAGGGGCTCCTGAATTCTTCAATTGT
genomic: ATGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
EST: gi|32851273|gb|CD990954.1|CD990954
EST:     CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAG                         GACCAGGGGCTCCTGAATTCTTCAATTGT
genomic: CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
EST: gi|60354612|gb|DN221585.1|DN221585
EST:     GGCATGATTTGGAGATAG                         GACCAGGGGCTCCTGAATTCTTCAATTGT
genomic: GGCATGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctataagcgatttgctgttttgtatttcccttaccgtgtacactttcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
                           cccttac  putative branch site (score: 3)
                                        cactttc  putative PPT
                 ttttgtattt  TA-rich tract