1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cacctttcatcattgaggatacactttatatgcttattatgttcttattactgtaaatgagttctgttctctcactgctctttttctttggctcatgcagGTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGG
species | Zea mays |
transcript | GRMZM2G046558_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCGCCGCTGCCCACGGCATCGCCCTCGTGGCACCTGACACCTCCCCAC GTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGGEST: gi|21760089|gb|BQ635630.1|BQ635630
genomic: CGCCGCCGCTGCCCACGGCATCGCCCTCGTGGCACCTGACACCTCCCCACgtatgtcgaa ... gctcatgcagGTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGG
EST: CGCCGCCGCTGCCCACGGCATCGCCCTCGCGGCACCTGACACCTCCCCAC GTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGGEST: gi|24462576|gb|BM660107.1|BM660107
genomic: CGCCGCCGCTGCCCACGGCATCGCCCTCGTGGCACCTGACACCTCCCCACgtatgtcgaa ... gctcatgcagGTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGG
EST: CGCCGCCGCTGCCCACGGCATCGCCCTCGTGGCACCTGACACCTCCCCAC GTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGGEST: gi|211376339|gb|FL031212.1|FL031212
genomic: CGCCGCCGCTGCCCACGGCATCGCCCTCGTGGCACCTGACACCTCCCCACgtatgtcgaa ... gctcatgcagGTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGG
EST: CGCCGCCGCTGCCCACGGCATCGCCCTCGTGGCACCTGACACCTCCCCAC GTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGG
genomic: CGCCGCCGCTGCCCACGGCATCGCCCTCGTGGCACCTGACACCTCCCCACgtatgtcgaa ... gctcatgcagGTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGG
tattactgtaaatgagttctgttctctcactgctctttttctttggctcatgcagGTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGG
ctctcac putative branch site (score: 1)
ttctctcactgctctt CT-rich tract
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacctttcatcattgaggatacactttatatgcttattatgttcttattactgtaaatgagttctgttctctcactgctctttttctttggctcatgcagGTGGGTTAAATATTGAAGGAGAGTCAGACAGCTATGATTTTGGTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- -ctttcat
- - - - - - - - -gatacac
- - - - - - - - - - - - - - -atgctta
- - - - - - - - - - - - - - - - - - ttatgtt