1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaaggaacattccatctccttccttatttgtttaagaatccatgtgtcatattatttcttgtgctcatgctgcttcctttgttttttttcctaaatgaatgttgtttcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAGAATTTGTCGTCTTGACGGAACTGCTTATGATACAGCTGCTGAAACTCG
species | Zea mays |
transcript | GRMZM2G046418_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|93012052|gb|EB637572.1|EB637572
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTTCTAAG GTGTGTGACTTGNAGAAGAATGTGCTTGCAGGGAGAAAAGTTGAEST: gi|148946348|gb|EC891654.2|EC891654
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|211392386|gb|FL034004.1|FL034004
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|71772733|gb|DR970660.1|DR970660
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAAAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|211395017|gb|FL034024.1|FL034024
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCANGGAGAAAAGTTGATGATAAAEST: gi|148935823|gb|EC879869.2|EC879869
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|31354102|gb|CD438459.1|CD438459
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|149001144|gb|EE038406.2|EE038406
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAEST: gi|211395009|gb|FL034016.1|FL034016
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGCAGAAGAATGTGCTTGCAGGGAGAAAAEST: gi|149111411|gb|EE294913.2|EE294913
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|71325371|gb|DR799360.1|DR799360
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|29544381|gb|CB604761.1|CB604761
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|28987546|gb|CB351688.1|CB351688
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|93283293|gb|EB675557.1|EB675557
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|211397626|gb|FL034026.1|FL034026
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGAEST: gi|149071588|gb|EE159980.2|EE159980
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|211395014|gb|FL034021.1|FL034021
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGNAGAAGAATGTGCTTGCAGGGAGAAAAAGT-GATGATAAEST: gi|149111412|gb|EE294914.2|EE294914
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAA-GTTGATGATAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGNAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAEST: gi|211395003|gb|FL034010.1|FL034010
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
EST: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAG GTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
genomic: GTGAGGCTGTTGCTCGTGTTAGAGCTGAAGTTGATAGGCTGTCTGCTAAGgtgaaggaac ... tcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAA
tgctcatgctgcttcctttgttttttttcctaaatgaatgttgtttcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAGAATTTGTCGTCTTGACGGAACTGCTTATGATACAGCTGCTGAAACTCG
tcctaaa putative branch site (score: 33)
ttgtttctttt putative PPT
ttttttttcctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaggaacattccatctccttccttatttgtttaagaatccatgtgtcatattatttcttgtgctcatgctgcttcctttgttttttttcctaaatgaatgttgtttcttttgtagGTGTGTGACTTGGAGAAGAATGTGCTTGCAGGGAGAAAAGTTGATGATAAAGAATTTGTCGTCTTGACGGAACTGCTTATGATACAGCTGCTGAAACTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT