Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcgcagttgccgaattctccccgcccgcccccacggcctgttctcttcggttcagctgcttagggttttaggtccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC

Basic information

species Zea mays
transcript GRMZM2G045371_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045371_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 3'ss of exon 3
gtgagtcgcagttgccgaattctccccgcccgcccccacggcct--gttc--tcttcggttcagctgcttagggttttaggtccctc-----cgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC
||||||||| |   | || || ||||| ||        |    |  |||     | |||||  |  |  |  || ||| ||||  ||      |||||||||||||  |||| |||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||| |||||||| ||||| || |||||||||
gtgagtcgccgcgccagatttgtcccctcctctttgtgcttttttggtttagcatccggtttgggagaattagggtttcggtcggtcggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGGGACATGAAGCCCCAGACCTTCGCCAGCCTCGTCTCCGCTCTCCTCTAC

upper sequence: GRMZM2G045371_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 1
gtgagtcgcagttgccgaattctccccgcccgcccccacggcctgttctcttcggttcagctgcttagggttttaggtccctccgc-----------agGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC
||  || | |  | ||   ||||     |       |    | | ||  |     ||    |  ||    ||||   |  ||  |            ||||| |||||  | || ||| ||||||| ||||| |||||||| || |||||||| ||||| || ||||||||||||||  | |||||||| || ||||| 
gtatgtagta-ctacccttttctattttcttcttttcttttcttttttccccaattttttttaattgtttttttgtttttctttgtttacttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTAT

upper sequence: GRMZM2G045371_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G10130.1 (Glycine max), 3'ss of exon 1
gtgagtcgcagttgccgaattctccccgcccgcccccacggcctgttctcttcggttcagctgcttagg--gttttaggtccctccgc-------------------agGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC
||  || || | | ||   | |||     |            || ||   ||   | |   |  |||    ||||| | || |||                      ||||| |||||  | || ||| ||||||| ||||||||||| || || |||||||| ||||| || ||||||||||||||| | |||||||| || || || 
gtatgtagc-gctaccctttactctttttcttttgtttttttctttttctttttctaccattttttaaattgtttttgttctctctttgtttacttttttttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTATCAGCTTCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGCTTAGTCTCTGCTCTGCTTTAT

upper sequence: GRMZM2G045371_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 2
--gtgagtcg-cagttgccgaattctccc-cgcccgcccccacggcctgttctcttcggttcagctgcttagggttttaggtccc--tccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC
   ||| ||  |  ||||   ||   |   |   |        |   |||| | ||   |  |  |  | |    ||||  |     |  | || || || ||| | || ||  ||||||| ||||||||||| || ||||||||||| |||||||| || |||||||| |||||||| ||||| || || || 
gtatgaatcatcgattgctctatcgccttgccttcatttttttgttttgttttatttc-tggattttttaaaaaatttaaattttgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396523|gb|DN229392.1|DN229392
EST:     AGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: AGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|18654592|gb|BM499397.1|BM499397
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGG-TGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|5268391|gb|AI770355.1|AI770355
EST:     CGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGGATCAGCTGCGCGAGGAGAG
genomic: CGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|37376121|gb|CF624562.1|CF624562
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACTGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|71759295|gb|DR957232.1|DR957232
EST:     CAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: CAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|211320125|gb|FL100656.1|FL100656
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|211320131|gb|FL100662.1|FL100662
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|76018879|gb|DT946049.1|DT946049
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|5901279|gb|AW042379.1|AW042379
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGGATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|211320126|gb|FL100657.1|FL100657
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|89251732|gb|DY623518.1|DY623518
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|32908095|gb|CF012908.1|CF012908
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACACT                         G
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcag-
EST: gi|32908095|gb|CF012908.1|CF012908
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACACT                         G
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcag-
EST: gi|15214985|gb|BI431121.1|BI431121
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|32802701|gb|CD954937.1|CD954937
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|32914687|gb|CF019499.1|CF019499
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|78106724|gb|DV525142.1|DV525142
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|76923710|gb|DV169620.1|DV169620
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|113702572|gb|EE680076.1|EE680076
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCGGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|211320129|gb|FL100660.1|FL100660
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|211320128|gb|FL100659.1|FL100659
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|32913371|gb|CF018183.1|CF018183
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|8577257|gb|BE129894.1|BE129894
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|60398455|gb|DN231271.1|DN231271
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|5847438|gb|AW000517.1|AW000517
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|19351598|gb|BM896130.1|BM896130
EST:     ACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACTCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGTTGTATCAGCTGTGCGAGGAGAG
genomic: ACAAGCTCTACATCGGCCTCTCAGGGCTCGCCAC-CGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|32858096|gb|CD997777.1|CD997777
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|71438351|gb|DR819401.1|DR819401
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|30088393|gb|CB886598.1|CB886598
EST:     CGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: CGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|60355770|gb|DN222743.1|DN222743
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|211320127|gb|FL100658.1|FL100658
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|76284605|gb|DV024173.1|DV024173
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|32802966|gb|CD955202.1|CD955202
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|5895676|gb|AW036922.1|AW036922
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGATGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|78091664|gb|DV520038.1|DV520038
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|50337097|gb|CO532223.1|CO532223
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|211320444|gb|FL345949.1|FL345949
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|18654593|gb|BM499398.1|BM499398
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|60395156|gb|DN228025.1|DN228025
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|32805139|gb|CD957375.1|CD957375
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|78086605|gb|DV514998.1|DV514998
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|89760015|gb|DY688633.1|DY688633
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|76923708|gb|DV169619.1|DV169619
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|78106723|gb|DV525141.1|DV525141
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|31361651|gb|CD446008.1|CD446008
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|32789254|gb|CD941490.1|CD941490
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|71774247|gb|DR972125.1|DR972125
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|60352145|gb|DN219118.1|DN219118
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|116827042|gb|EC870897.1|EC870897
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
EST: gi|32850853|gb|CD990534.1|CD990534
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTAT
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTAT
EST: gi|211275645|gb|FL309928.1|FL309928
EST:     GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCT                         GTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCAGGGCTCGCCACCGACGCCCAGACGCTgtgagtcgca ... ccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccccacggcctgttctcttcggttcagctgcttagggttttaggtccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC
                                            tccctccgc  CT-rich tract
                                     tttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtcgcagttgccgaattctccccgcccgcccccacggcctgttctcttcggttcagctgcttagggttttaggtccctccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC