Sequence
atgc intronic sequence ATGC exonic sequencegtaatgtgtcttgttgatattacattggaattatcttatctttctttctgtcaaaataattagtttttttccttctatttgtgcagAGAATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGGCAAGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G045241_T07 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g63020.1 (Oryza sativa), 3'ss of exon 6
gtaatgtgtcttgttgatattacattggaattatc--ttatctttctttctgtcaaaataattagtttttttccttctatttgtgcagAGAATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGGCAAGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAG
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gta-tacctttcgactatattctgttgaagttataggctgtctatataccctagaagttaattagccttctctctttcctcttt--agAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAG
upper sequence: GRMZM2G045241_T07 (Zea mays), 3'ss of exon 2
lower sequence: AT4G13020.1 (Arabidopsis thaliana), 3'ss of exon 6
----gtaatg-tgtcttgt-tgatattacattggaattatcttatctttctttctgtcaaaataattagtttttttccttctatttgtgcagAGAATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGGCAAGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAG
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gtatgttttggtactttgtattgtatta-attgaaatggttttcgctctttgaatgtcttataaacaagttttgttc----tgtttctgaagAGAATTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGTTGGCTAGAGAAGTTGCATCTATGCCTCCTTACACTGAATATGTGTCCACACG
upper sequence: GRMZM2G045241_T07 (Zea mays), 3'ss of exon 2
lower sequence: Vv07s0151g00350.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------------------gtaatgtg---tcttgttgatattacattg--gaattatcttatctttcttt--ctgtcaaaataattagtttttttccttctatttgtgcagAGAATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGGCAAGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAG
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gtatgaagttgacttctacaaaattatgcacttgtgcagtctatgatttggaattttatttgcatcttcatgaagaattgtgtaggctttatctaatagtgtatattatcaaacaccatttctgtcttca---agAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGGCTAGAGAAGTATCATCTATGCCTCCTTATACTGACTATGTGTCCACACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcttatctttctttctgtcaaaataattagtttttttccttctatttgtgcagAGAATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGGCAAGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAG
ttagtttttttccttc CT-rich tract
aaaataattagttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgtgtcttgttgatattacattggaattatcttatctttctttctgtcaaaataattagtttttttccttctatttgtgcagAGAATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGGCAAGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA