Sequence
atgc intronic sequence ATGC exonic sequencegtaagtagtaagtgctcttttcactttttactttagatggtctggaaggttaatttgacctttacttcctatttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTGTAAGTGCAAGAACTCACCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G045241_T06 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g63020.1 (Oryza sativa), 3'ss of exon 2
gtaagtagtaagtgctcttttcactttttactttagatggtctggaaggttaatttgacctttacttcctatttctta-cagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTGTAAGTGCAAGAACTCACCAA
|| || ||||| | | | | || | | | | || | | || | | | || ||||||| |||||||||| ||||| || ||||||| ||||| ||||||||||||||||||| ||||| ||| ||||| |||||||||
gtcagcagtaattatc--tcgcgaatcatattatttgttgcgtgcgcactaatttctgacatggcatctaatttcttctcagGTACAAAGTGATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|166421745|gb|EG232073.1|EG232073EST: CAAACACTCTTTGGTTAGATTAAGAATCATGGAAAG GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT
genomic: CAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagta ... tttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttactttagatggtctggaaggttaatttgacctttacttcctatttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTGTAAGTGCAAGAACTCACCAA
atttgac putative branch site (score: 4)
cctttacttcctattt CT-rich tract
ttaatttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtagtaagtgctcttttcactttttactttagatggtctggaaggttaatttgacctttacttcctatttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTGTAAGTGCAAGAACTCACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC