Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211339123|gb|FL064683.1|FL064683EST: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTATCTGTGGTGCT GTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
genomic: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
EST:
gi|4886203|gb|AI677323.1|AI677323EST: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCT GTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
genomic: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
EST:
gi|211252164|gb|FL064672.1|FL064672EST: AGCAGCTTACTCGGAACAGAAAGTTTTTGACCTGTGGTACCTGTGGTGCT GTATCTGATCGCATCCGCACTTGACTGACTACA
genomic: AGCAGCTTACTCGGAACAGAAAGTTTTTGAC-TGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATC-GCACTTGACTGACTACA
EST:
gi|78086263|gb|DV514656.1|DV514656EST: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCT GTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
genomic: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
EST:
gi|211339126|gb|FL064686.1|FL064686EST: GCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGGTACCTGTTGGTGCT GTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGT
genomic: GCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGG-TACCTGT-GGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGT
EST:
gi|60338514|gb|DN205487.1|DN205487EST: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCT GTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
genomic: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
EST:
gi|37380052|gb|CF626807.1|CF626807EST: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCT GTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
genomic: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
EST:
gi|211252163|gb|FL064671.1|FL064671EST: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTATCTGTGGTGCT GTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
genomic: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
EST:
gi|211252166|gb|FL064674.1|FL064674EST: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCT GTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
genomic: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
EST:
gi|211252165|gb|FL064673.1|FL064673EST: CAGCAGCTTACTCGGAACAGAAAGTTTT-GACTGTGGTACCTGTGGTGCT GTATCTGATCGCAT
genomic: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCAT
EST:
gi|78025996|gb|DV494383.1|DV494383EST: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCT GTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
genomic: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
EST:
gi|149084440|gb|EE173898.2|EE173898EST: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCT GTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
genomic: CAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
52ACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCTCAATACAATGGCAGTTTTTGTGCTAGTTGTGGCAAAATTGCCAAACATG
Block sizes:
49 (upstream exon),
46 (downstream exon)
Score:
85ACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCTCAATACAATGGCAGTTTTTGTGCTAGTTGTGGCAAAATTGCCAAACATG
Block sizes:
49 (upstream exon),
46 (downstream exon)
Score:
78ACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCTCAATACAATGGCAGTTTTTGTGCTAGTTGTGGCAAAATTGCCAAACATG
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
79ACCAAGGCATCTACAGCAGATTGACATGGTGGGAGCAAATTGACAATGGTCAGCAGCTTACTCGGAACAGAAAGTTTTTGACTGTGGTACCTGTGGTGCTgtaagttcca ... gttcttccagGTATCTGATCGCATCGCACTTGACTGACTACAAGCAGCCGATGTTTTTCCTCAATACAATGGCAGTTTTTGTGCTAGTTGTGGCAAAATTGCCAAACATG