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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggaaggttttgcaaccctagttatggactctatcgcattctggcattgctctaacttttgttttaaatagaaatgtcttgttctgttctgcacttcagGTCAGTGAATTGTGGAAGACACACATGAGGCACCAGGATCCAGCAGAGAATTTGAACAAGGATATAATATCGCACTTTGTGCTCCGTCTAGTCTACTGCA

Basic information

species Zea mays
transcript GRMZM2G044317_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044317_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g22400.1 (Oryza sativa), 3'ss of exon 2
---atggaaggttttgcaaccctagttatggactctatcgcattctggcattgctctaacttttgttttaaatagaaatgtct-tgttctgttctgcacttcagGTCAGTGAATTGTGGAAGACACACATGAGGCACCAGGATCCAGCAGAGAATTTGAACAAGGATATAATATCGCACTTTGTGCTCCGTCTAGTCTACTGCA
       |   ||| ||      ||||     |||||     ||      ||   |  | |||  ||   | ||    | ||| | |||  | ||     | ||||||  |||||||||||  | || |||||||||||||||||  |||||| |||||||||||| |||||||| |||||||| |||||||| ||||||||||
cttgaacataatttcgcggttagagtttcaagctcta----gttaccaagtttaccatattttctttaacagtaatcctatctgttttccctccttgtgcttagGTCAAGGAATTGTGGAAAGCCCATATGAGGCACCAGGATCCTACAGAGACTTTGAACAAGGACATAATATCTCACTTTGTTCTCCGTCTTGTCTACTGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgctctaacttttgttttaaatagaaatgtcttgttctgttctgcacttcagGTCAGTGAATTGTGGAAGACACACATGAGGCACCAGGATCCAGCAGAGAATTTGAACAAGGATATAATATCGCACTTTGTGCTCCGTCTAGTCTACTGCA
     ctctaac  putative branch site (score: 2)
                                tcttgttctgttct  putative PPT
        taacttttgttttaaa  TA-rich tract