1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttctgtagtgtgctatttattcaatattgtagtgaaatgtttgagttgctaactaacaatcatatgtagttctggtgctaatttctcttctattgttcagGTTACTGAAGAAAACCTCGCAGCACTATTTATAAATTGCGGGCAG
species | Zea mays |
transcript | GRMZM2G044246_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ttgctaactaacaatcatatgtagttctggtgctaatttctcttctattgttcagGTTACTGAAGAAAACCTCGCAGCACTATTTATAAATTGCGGGCAG
tttctcttctattgtt CT-rich tract
aatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgtagtgtgctatttattcaatattgtagtgaaatgtttgagttgctaactaacaatcatatgtagttctggtgctaatttctcttctattgttcagGTTACTGAAGAAAACCTCGCAGCACTATTTATAAATTGCGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - tgtgcta
- - - - - - - - - - - - - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - - - - - -ttgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggtgc