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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtacgcaatgatacagccaatatgactgggattcttgtttcacattggtctgctgatgctaatatgatatagtagagtgcctttctgatatacagGCTTTGGCATTGTAGGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCAGTTCAGGG

Basic information

species Zea mays
transcript GRMZM2G044237_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g17120.2 (Oryza sativa), 3'ss of exon 6
gtaggtac-gcaatgatacagccaa--tatgactgggattcttgtttcacattggtctgctgatgctaatatgatatagtagagtgcctttctgatatacagGCTTTGGCATTGTAGGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCAGTTCAGGG
    |||| |   ||  ||| ||||  ||||  || | |   |||   | | | ||  ||| |  ||| ||  || |  |           ||||      || |||| || || ||||||||||| |||||||||| | |||||||||||||||||||||||| ||  || ||||
----gtacagtgctgccacaaccaaactatggttgag-tgactgtactaaactagtaggctaac-ctagtacaatttcat-----------ctgacgcttgggttttgacaatgcagGAGGCACTTGTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCCATTGAGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacattggtctgctgatgctaatatgatatagtagagtgcctttctgatatacagGCTTTGGCATTGTAGGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCAGTTCAGGG
                                     tgcctttct  CT-rich tract
                   taatatgatatagta  TA-rich tract