1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caccactgcaccaggcctgcccactaagatcattacataaatgttagcaaatatcttatgttatattttcccgagtatatcctaacaacatcttccacagCGTTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGGGTCTGAAACTATTAAAGTTCCAACTGCTCATTATGAATTTGGTGCCAATTTTTTAGATCCAAAG
species | Zea mays |
transcript | GRMZM2G043983_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTCTTTGAAGCCTGAACTTTTTGAAGGATTGAG CGTTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGGGTCTGAAACTATTAA
genomic: TGTCTTTGAAGCCTGAACTTTTTGAAGGATTGAGgtttgacttc ... tcttccacagCGTTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGGGTCTGAAACTATTAA
agcaaatatcttatgttatattttcccgagtatatcctaacaacatcttccacagCGTTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGGGTCTGAAACTATTAAAGTTCCAACTGCTCATTATGAATTTGGTGCCAATTTTTTAGATCCAAAG
tcctaac putative branch site (score: 1)
catcttcc putative PPT
atatcttatgttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccactgcaccaggcctgcccactaagatcattacataaatgttagcaaatatcttatgttatattttcccgagtatatcctaacaacatcttccacagCGTTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGGGTCTGAAACTATTAAAGTTCCAACTGCTCATTATGAATTTGGTGCCAATTTTTTAGATCCAAAG
- - -ctgcacc
- - - - - - - gcctgcc
- - - - - - - - - - - - - - - - - acataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaca