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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttctgaaattttactggatgctataagttataagttataactatgttcgattgttcggttacaaacttgttactgattatggagccatgcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTTGGGAATGATATTTTGCTGGAAAGTGGAGAAATTAACAGAGCTCTATTGG

Basic information

species Zea mays
transcript GRMZM2G043819_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043819_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g25880.1 (Oryza sativa), 3'ss of exon 2
---tgttctgaaattttactggatgcta--taagttataagttataactatgttcg-attgttcggttacaaacttgttactgattatggagccatgcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTTGGGAATGATATTTTGCTGGAAAGTGGAGAAATTAACAGAGCTCTATTGG
    ||||| ||    ||||  |  ||    |||||  |   ||  | |||| ||| | |||||  |   | | ||  ||||||||  ||||  || |||||  || |||| || |||||||||||  |||||||||||||||||||| |||| ||||| |||||| || || | |||| |||||||||| || ||||||  || |
attagttctcaa----tactaaaccctgatcaagttgcatactagca-tatggtcgcaatgttcattgcaagattttgtactgattg-ggagttatacatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTGGAAATGATGTTCTGTTAGAAAATGGAGAAATTGACCGAGCTCGCTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26456164|gb|CA827747.1|CA827747
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|60355072|gb|DN222045.1|DN222045
EST:     CTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: CTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211446214|gb|FL416367.1|FL416367
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211205006|gb|FL416127.1|FL416127
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211054417|gb|FL403416.1|FL403416
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211410947|gb|FL407146.1|FL407146
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211252013|gb|FL400527.1|FL400527
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211123829|gb|FL373670.1|FL373670
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211294902|gb|FL412755.1|FL412755
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211217739|gb|FL411412.1|FL411412
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCAC
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCAC
EST: gi|211343815|gb|FL403623.1|FL403623
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGAT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGAT
EST: gi|211169680|gb|FL404312.1|FL404312
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|32908534|gb|CF013347.1|CF013347
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|29945277|gb|CB815559.1|CB815559
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAAGAAGATTGT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAA-GAAGATTGT
EST: gi|211092583|gb|FL396363.1|FL396363
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|32907607|gb|CF012420.1|CF012420
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211494398|gb|FL426462.1|FL426462
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211448341|gb|FL416382.1|FL416382
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211542881|gb|FL420849.1|FL420849
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|9733338|gb|BE512195.1|BE512195
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211450081|gb|FL399776.1|FL399776
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211060841|gb|FL423062.1|FL423062
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211112901|gb|FL386074.1|FL386074
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|32805374|gb|CD957610.1|CD957610
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211147176|gb|FL377179.1|FL377179
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211242608|gb|FL373763.1|FL373763
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211504302|gb|FL391669.1|FL391669
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211008636|gb|FL395324.1|FL395324
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211298927|gb|FL395133.1|FL395133
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211037734|gb|FL425646.1|FL425646
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|13558973|gb|BG550328.1|BG550328
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211494364|gb|FL425988.1|FL425988
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211524517|gb|FL409914.1|FL409914
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211437409|gb|FL427300.1|FL427300
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCWGAAAGGCACCAGAGGTTGGAAGAAGATTGTNAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|78082529|gb|DV510941.1|DV510941
EST:     GTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: GTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211500284|gb|FL429978.1|FL429978
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|9952347|gb|BE638930.1|BE638930
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|33942462|gb|CF349062.1|CF349062
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|33942497|gb|CF349097.1|CF349097
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211294905|gb|FL412758.1|FL412758
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211325367|gb|FL370104.1|FL370104
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211502332|gb|FL413296.1|FL413296
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGC
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGC
EST: gi|211076171|gb|FL369896.1|FL369896
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211016928|gb|FL393619.1|FL393619
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211035210|gb|FL421287.1|FL421287
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211369524|gb|FL423731.1|FL423731
EST:     CTTTAGGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGA
genomic: CTTTAGGG-ACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGA
EST: gi|211315731|gb|FL419296.1|FL419296
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|60357588|gb|DN224561.1|DN224561
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211223904|gb|FL407475.1|FL407475
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGTATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAAGAAGATTGTWAAAGCCTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAA-GAAGATTGTAAAAGCCTT
EST: gi|211156855|gb|FL415199.1|FL415199
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211474284|gb|FL410805.1|FL410805
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGTATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211315824|gb|FL424587.1|FL424587
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211273313|gb|FL386908.1|FL386908
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGG
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGG
EST: gi|78118477|gb|DV536862.1|DV536862
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211456097|gb|FL381475.1|FL381475
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211348489|gb|FL394294.1|FL394294
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211388160|gb|FK971534.1|FK971534
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAA
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAA
EST: gi|211210379|gb|FL427964.1|FL427964
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAKGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211273342|gb|FL390041.1|FL390041
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
EST: gi|211439198|gb|FL392581.1|FL392581
EST:     TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGG                         GATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT
genomic: TCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 221

GGTGGGTTTGACGGGTGGCATCGCATCTGGGAAGAGCACTGTCTCTAACCTCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTTGGGAATGATATTTTGCTGGAAAGTGGAGAAATTAACAGAGCTCTATTGG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 162

GGTGGGTTTGACGGGTGGCATCGCATCTGGGAAGAGCACTGTCTCTAACCTCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTTGGGAATGATATTTTGCTGGAAAGTGGAGAAATTAACAGAGCTCTATTGG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 129

GGTGGGTTTGACGGGTGGCATCGCATCTGGGAAGAGCACTGTCTCTAACCTCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTTGGGAATGATATTTTGCTGGAAAGTGGAGAAATTAACAGAGCTCTATTGG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 113

GGTGGGTTTGACGGGTGGCATCGCATCTGGGAAGAGCACTGTCTCTAACCTCTTTAGGGACTCTGGTGTCCCCGTTGTGGATGCCGATGTCATTGCTCGGgtaagcaagc ... gcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTTGGGAATGATATTTTGCTGGAAAGTGGAGAAATTAACAGAGCTCTATTGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcgattgttcggttacaaacttgttactgattatggagccatgcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTTGGGAATGATATTTTGCTGGAAAGTGGAGAAATTAACAGAGCTCTATTGG
                           tactgat  putative branch site (score: 113)
                                               atttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttctgaaattttactggatgctataagttataagttataactatgttcgattgttcggttacaaacttgttactgattatggagccatgcatttatagGATGTAGTGCAGAAAGGCACCAGAGGTTGGAAGAAGATTGTAAAAGCCTTTGGGAATGATATTTTGCTGGAAAGTGGAGAAATTAACAGAGCTCTATTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
tgttctg
- - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagcca