Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcacccacactagtgaattcacctgaataactgtcggccactgccaaatgcttgctgctattctgaccgatacccactggcaatgccatccataaatctgcgctcacagGATGCTCCTTTACGAGTTCGTCGAAAATGGCAACTTGGAGCAGTGGCTGCACGGCGACGTCGGACCGGTCAGCCCTCTGACCTGGGAAATACGGATGAAG

Basic information

species Zea mays
transcript GRMZM2G043470_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043470_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g12680.2 (Oryza sativa), 3'ss of exon 2
------------gtgagcaccca--cactagtgaattcacctgaataactgtcggccactgccaaatgcttgctgctattctgaccgatacccactggcaatgccatccataaatctgcgctcacagGATGCTCCTTTACGAGTTCGTCGAAAATGGCAACTTGGAGCAGTGGCTGCACGGCGACGTCGGACCGGTCAGCCCTCTGACCTGGGAAATACGGATGAAG
               ||| |  |  |     ||| |||     | |||   |    ||      ||  |  |   | || | |  |||| |  |    |||||||||| || | || | ||||||||||||||| | |||||||||||||| || |||||| ||||||||||||||||||||||||| || ||||||||||| ||||| ||||| || |||||||||
gtaagtgatgccaccagctctgaatcctcgatgagttctgagcattaataattcagcagaagtgaaaacgggggacaatgcag--cgatgcaaataatcaatgccatc-atcactccgtgctcacagGATGCTCGTGTACGAGTTCGTCGAGAACGGCAACCTGGAGCAGTGGCTGCACGGCGACGTTGGCCCGGTCAGCCCGCTGACATGGGACATTCGGATGAAG

upper sequence: GRMZM2G043470_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S358_6V6.1 (Physcomitrella patens), 3'ss of exon 2
gtgagcacccacactagtgaat-tcacctgaataactgtcggccactgccaaatgcttgctgctatt-ctgaccgatacccactggcaatgccatccataaatctgcgctcacagGATGCTCCTTTACGAGTTCGTCGAAAATGGCAACTTGGAGCAGTGGCTGCACGGCGACGTCGGACCGGTCAGCCCTCTGACCTGGGAAATACGGATGAAG
                |||||| ||| |       ||  | ||| | |     ||  || ||      ||    |||   |  ||   |   | |   |      ||  |  |||||||||  | ||||||| ||| || ||||| |||||||||||||||||||| ||     |    |     |   | ||  | ||||||   || |||  |
----------------gtgaatgtcatcc---cttcttcctgcc-cagtttgttgtgtggtggcgcagctccttgatgttctttgttgacctcgtttctgg--tggctgttgcagGATGCTTGTGTACGAGTACGTGGATAATGGAAACTTGGAGCAGTGGCTGCATGGACCTCTGTCCCAAACAAATACACTTCCATGGGAAGCCCGCATGCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctattctgaccgatacccactggcaatgccatccataaatctgcgctcacagGATGCTCCTTTACGAGTTCGTCGAAAATGGCAACTTGGAGCAGTGGCTGCACGGCGACGTCGGACCGGTCAGCCCTCTGACCTGGGAAATACGGATGAAG
      ttctgac  putative branch site (score: 2)
                                     ataaatct  TA-rich tract