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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttttggagaaagaaattcacttcatcttgctgaattacatgacaatgctaataacattctaacttagctcttgatttggtgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTTGTCTTCCAG

Basic information

species Zea mays
transcript GRMZM2G043350_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043350_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g35530.1 (Oryza sativa), 3'ss of exon 2
-------gtaggttttggagaaagaaattcacttcatcttgctgaattacatgacaatgctaataacattctaacttagctcttgatttggtgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTTGTCTTCCAG
        |   ||||||| ||||||  || | | |  || || || ||  ||   ||  ||||  |||||||||||   |||  | ||  || ||| ||||| || |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||
gtatgctattatttttggacaaagaatgtcgcatgaagtttcttaagta--tggagataataatttcattctaacttgattct-aactttttgtcctctagACTATTAGCTATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211388201|gb|FL200487.1|FL200487
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388200|gb|FL200486.1|FL200486
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|71434429|gb|DR815479.1|DR815479
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|6021078|gb|AW066006.1|AW066006
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211390827|gb|FL200489.1|FL200489
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211385567|gb|FL200472.1|FL200472
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388193|gb|FL200479.1|FL200479
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|6021040|gb|AW065968.1|AW065968
EST:     GCCACATAATACCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388189|gb|FL200475.1|FL200475
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388188|gb|FL200474.1|FL200474
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211390829|gb|FL200491.1|FL200491
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388198|gb|FL200484.1|FL200484
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388194|gb|FL200480.1|FL200480
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCYATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388199|gb|FL200485.1|FL200485
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388202|gb|FL200488.1|FL200488
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatgacaatgctaataacattctaacttagctcttgatttggtgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTTGTCTTCCAG
                                             tgcccttt  CT-rich tract
              taataacattctaa  TA-rich tract