1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggcacccatctcgaatcaatctgttgacggacgatctgttggtttcacttttcaccgaccccttgtttgtctggtgatgccttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAAATCG
species | Zea mays |
transcript | GRMZM2G042552_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG GCGCTGGCCAAGGAGGTGGEST: gi|32834245|gb|CD973923.1|CD973923
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGG
EST: GCGCAACGACATGGGATCCGCCAAG GCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACEST: gi|113702321|gb|EE679825.1|EE679825
genomic: GCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG GCGCTGGCCAAGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
ctgttggtttcacttttcaccgaccccttgtttgtctggtgatgccttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAAATCG
tgccttcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcacccatctcgaatcaatctgttgacggacgatctgttggtttcacttttcaccgaccccttgtttgtctggtgatgccttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA