1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaggcacccatctcgaatcaatctgttgacggacgatctgttggtttcacttttcaccgaccccttgtttgtctggtgatgccttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAAATCG
species | Zea mays |
transcript | GRMZM2G042552_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGCCATCTGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG GCGCTGGCCATGGAGGTGGTGCGCTCGAGGAEST: gi|76931381|gb|DV172714.1|DV172714
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGA
EST: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG GCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACEST: gi|76293382|gb|DV032950.1|DV032950
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG GCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACEST: gi|149039515|gb|EE046658.2|EE046658
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG GCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACEST: gi|211061419|gb|FL334691.1|FL334691
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG GCGCTGGCCAAGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACEST: gi|211354155|gb|FL091860.1|FL091860
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG GCGCTGGCCAAGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACEST: gi|32804763|gb|CD956999.1|CD956999
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: GATCCGCCAAG GCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACEST: gi|166458771|gb|EG039295.1|EG039295
genomic: GATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG GCGCTGGCCAAGGAGGTGG
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGG
ctgttggtttcacttttcaccgaccccttgtttgtctggtgatgccttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAAATCG
tgccttcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcacccatctcgaatcaatctgttgacggacgatctgttggtttcacttttcaccgaccccttgtttgtctggtgatgccttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA