1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgttagtcagctttaattttgtggagcacttaaaccaacaccacgctattaattaagtaataattaacctcgttaatgtcgttgttgtttaccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCGACCTTCGCGTGCGCCATGAGCAACATCCTTCCTGCCATGACCTTCGTC
species | Zea mays |
transcript | GRMZM2G042364_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGG GCCTGTGATAGAC-AGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGEST: gi|50335600|gb|CO530726.1|CO530726
genomic: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGGgttagtgccc ... taccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGG
EST: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGG GCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCEST: gi|211123823|gb|FL137137.1|FL137137
genomic: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGGgttagtgccc ... taccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCC
EST: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGG GCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCEST: gi|149099820|gb|EE185873.2|EE185873
genomic: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGGgttagtgccc ... taccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCC
EST: ACATGACGTGGTCCGTCTTCCTCCAGATCTTTCGTGTTGGCACTGCTCGG GCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCEST: gi|211123824|gb|FL137138.1|FL137138
genomic: ACATGACGTGGTCCGTCTTCCTCCAGATCTT-CGTGTTGGCACTGCTCGGgttagtgccc ... taccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCC
EST: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGG GCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCEST: gi|211123825|gb|FL137139.1|FL137139
genomic: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGGgttagtgccc ... taccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCC
EST: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGG GCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCEST: gi|211123828|gb|FL137142.1|FL137142
genomic: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGGgttagtgccc ... taccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCC
EST: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGG GCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCEST: gi|78023216|gb|DV491603.1|DV491603
genomic: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGGgttagtgccc ... taccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCC
EST: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGG GCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCEST: gi|211124593|gb|FL137143.1|FL137143
genomic: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGGgttagtgccc ... taccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCC
EST: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGG GCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCC
genomic: AACATGACGTGGTCCGTCTTCCTCCAGATCTTCGTGTTGGCACTGCTCGGgttagtgccc ... taccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCC
gctattaattaagtaataattaacctcgttaatgtcgttgttgtttaccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCGACCTTCGCGTGCGCCATGAGCAACATCCTTCCTGCCATGACCTTCGTC
tttacctt CT-rich tract
taattaagtaataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttagtcagctttaattttgtggagcacttaaaccaacaccacgctattaattaagtaataattaacctcgttaatgtcgttgttgtttaccttacagGCCTGTGATAGACCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCGACCTTCGCGTGCGCCATGAGCAACATCCTTCCTGCCATGACCTTCGTC
- - - - - - - - - - - tggagca
- - - - - - - - - - - - - - - - - - caacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt