ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...caccgaagccttttgcgtttgtgatatgatatgttttattgagttgcttctggacccatagtcccatgctaacaatttatgagggaaaaaatgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG

Basic information

species	Zea mays
transcript	GRMZM2G041881_T01
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G041881_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g01910.1 (Oryza sativa), 3'ss of exon 2

----caccgaagccttttgcgtttgtgatatgatatgtt--ttattgagttgcttctggacccatagtcccatgctaacaatttatgagggaaaaaatgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG
     |     | ||| |   |||| |||  ||| | ||    | ||  |||      | ||  | |   |||  ||| | ||  || |      | |  || |||||||||||||||||| ||||||||  | ||||| ||||||||| ||||||| ||||| ||||||||| | ||||||||||  ||||||||||| || |||
aagatatactgggcttgtat-tttgggatccgatcttttaaacaatgtattgtgctgtggcctttggattcatattaatacttgttgtgc-----atttatggcagGAAGAAGAAGGCAGTTCACAAGACTACCACCACTGATGACAAGAGGCTTCAAAGCACCTTGAAAAGAGTAGGAGTGAACAACATTCCTGGTATCGAAGAG

upper sequence: GRMZM2G041881_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G12170.1 (Glycine max), 3'ss of exon 2

caccgaagccttttgcgtttgtgatatgatatgttttattgagttgcttctggacccatagtcccatgctaacaatttatgagggaaaaaatgctga---cagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG
    | || |  || |||| |   |||  | | | | ||| |        || | |  | ||          |  || |||         ||| |      || ||||||||||| |||||||||||  ||||||| ||||||||  |||||||||||||  |||| ||||| || |||||  | || || | ||||||||||
gtttgcagtcaatt-cgttggctttat--tttttgtaattaaacacaaaatgaatctgttgtgttgaaagttctcttaatgttttgtcttatgttcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG

upper sequence: GRMZM2G041881_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G04380.1 (Glycine max), 3'ss of exon 2

-caccgaagccttttgcgtttgtgatatgatatgttttattgagttgcttctggacccatagtcccatgctaacaatttatgagggaaaaaatgctgac---agGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG
 |||  ||    || || |||  | | |    | |   |||||        || | |  | ||          |  ||||||         ||| |      || ||||||||||| |||||||||||  ||||||| ||||||||  |||||||||||||  |||| ||||| || |||||  | || |||| |||||| |||
tcactcaatttgttggctttttagtttt----tttggaattgaacacaaaatgcatctgttgtgttgaatgctctctttatgttttgtcttatgtttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCTGCTATTGAAGAG

upper sequence: GRMZM2G041881_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G12180.1 (Glycine max), 3'ss of exon 2

caccgaagccttttgcgtttgtgatatgatatgttttattgagttgcttctggacccatagtcccatgctaacaatttatgagggaaaaaatgctga---cagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG
    | || |  || |||| |   || | | | | | ||| |        || |    | ||          |  || |||         |||||      || ||||||||||| |||||||||||  ||||||| ||||||||  |||||||||||||  |||| ||||| || |||||  | || || | ||||||||||
-tttgcagtcaatt-cgttggcttta-gttttttataattaaacacaaaatgtatttgttgtgttgaaagttctcttaatgttttgtcttatgctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG

upper sequence: GRMZM2G041881_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G73230.1 (Arabidopsis thaliana), 3'ss of exon 2

caccgaagccttttgcgtttgtgatatgatatgttttattgagttgcttctggacccatagtcccatgctaacaatttatgagggaaaaaatgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG
      |  | |||  || | |  | ||| || | |  ||  |    || |      ||| || |     |||| |||         |   |  |  ||| ||||||||||| || ||||||||| | || |||||||||||| |||| ||||||||  | || ||| ||||||| ||  | ||||| |  ||||| || 
--gtatactcatttatgtcttttctgtga-atttgtgtttttgccatttttcatgttatattctc---taaacattttg--------actctcatttcagAAAGAAGAAGGCTGTTCACAAGACCACTACAACCGATGACAAGAGGCTCCAGAGCACTCTTAAGAGAGTTGGAGTCAATTCCATTCCCGCCATTGAAGAA

upper sequence: GRMZM2G041881_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S28_196V6.1 (Physcomitrella patens), 3'ss of exon 2

caccgaagccttttgcgtttgtgatatgatatgttttattgagt-tgcttctggacccata-gtcccatgctaacaatttatgagggaaaaaat--gctga-cagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG
       | ||  | | |||||  |    | ||      || |  |    || | | |||  | || |||    | |    ||        |||  ||||| |||||||||||| || || ||||||||| | ||||| || |||||| || | |||||||| |||||  || | ||||||||||| ||||| || ||||| |||
----ttcgtctgctac-tttgtactgctttgtgaggctctgggagtttccctagtctcatgtgccctatgtggtctacccttgtcaatttcaattggctgaacagGAAGAAGAAAGCTGTTCACAAGACCACCACCACTGACGACAAGAGGTTGCAGAGCACCTTGAAGCGACTCGGAGTGAACACCATTCCCGGAATTGAAGAG

upper sequence: GRMZM2G041881_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ21066 (Selaginella moellendorffii), 3'ss of exon 1

caccgaagccttttgcgtttgtgatatgatatgttttattgagttgcttctggacccatagtcccatgctaacaattta-tgagggaaaaaatgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG
                                                |   ||       |   ||   || | |||  ||||           |  |||||||||||||||||| ||||||||||| |||||||| |||||| || | || | |||| | || ||| | || || ||||| || || || |||||||||
-----------------------------------------------gtaaagatttgggattagattggaagattttggtgagaattctggcaatcgcagGAAGAAGAAGGCAGTGCACAAGACCGCGACCACCGACGACAAGAGGTTGCAAAACACGCTCAAGAGATTGGGCGTCAACACCATCCCCGGCATTGAGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211339244|gb|FL068784.1|FL068784

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211339252|gb|FL068792.1|FL068792

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211164808|gb|FL068777.1|FL068777

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211164806|gb|FL068775.1|FL068775

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211164809|gb|FL068778.1|FL068778

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211164811|gb|FL068780.1|FL068780

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGCCCACAAGACCGCAACCACCGA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGA

EST: gi|148987195|gb|EE031027.2|EE031027

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|15426682|gb|BI542504.1|BI542504

EST:     GAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: GAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211164805|gb|FL068774.1|FL068774

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|26557491|gb|CA829726.1|CA829726

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|20301079|gb|BQ164022.1|BQ164022

EST:     CTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: CTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|27522033|gb|CA989139.1|CA989139

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|60349064|gb|DN216037.1|DN216037

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211530335|gb|FL172598.1|FL172598

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|113704092|gb|EE681596.1|EE681596

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|32864537|gb|CF004219.1|CF004219

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211163209|gb|FL068766.1|FL068766

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211163205|gb|FL068762.1|FL068762

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|32913290|gb|CF018102.1|CF018102

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACTAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211533333|gb|FL172606.1|FL172606

EST:     TGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: TGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|32860918|gb|CF000600.1|CF000600

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211164799|gb|FL068768.1|FL068768

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211163207|gb|FL068764.1|FL068764

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|78027665|gb|DV496052.1|DV496052

EST:     GAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: GAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|4775904|gb|AI664907.1|AI664907

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCNCCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211163208|gb|FL068765.1|FL068765

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211164807|gb|FL068776.1|FL068776

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211339256|gb|FL068796.1|FL068796

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|44901023|gb|CK827568.1|CK827568

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|60357682|gb|DN224655.1|DN224655

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|37397580|gb|CF636090.1|CF636090

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|32912167|gb|CF016979.1|CF016979

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|13490637|gb|BG517401.1|BG517401

EST:     AGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211164804|gb|FL068773.1|FL068773

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|71299858|gb|DR785949.1|DR785949

EST:     GCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: GCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|32911219|gb|CF016031.1|CF016031

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGACGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|14997050|gb|BI319140.1|BI319140

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211530340|gb|FL172603.1|FL172603

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211341639|gb|FL068798.1|FL068798

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|149031500|gb|EE286359.2|EE286359

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|29543561|gb|CB603941.1|CB603941

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|89250649|gb|DY622435.1|DY622435

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|60337129|gb|DN204102.1|DN204102

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211164800|gb|FL068769.1|FL068769

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211339251|gb|FL068791.1|FL068791

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|71299860|gb|DR785950.1|DR785950

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211163206|gb|FL068763.1|FL068763

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211339245|gb|FL068785.1|FL068785

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211164812|gb|FL068781.1|FL068781

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211339254|gb|FL068794.1|FL068794

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|32937018|gb|CF041837.1|CF041837

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|37387261|gb|CF630823.1|CF630823

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|101389180|gb|EB816545.1|EB816545

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|9953969|gb|BE640552.1|BE640552

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|28987634|gb|CB351732.1|CB351732

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|88752260|gb|DY536401.1|DY536401

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211339243|gb|FL068783.1|FL068783

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|32930159|gb|CF034971.1|CF034971

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|148987194|gb|EE031026.2|EE031026

EST:     GAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: GAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211339246|gb|FL068786.1|FL068786

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211530342|gb|FL172605.1|FL172605

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCG
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCG

EST: gi|32862763|gb|CF002445.1|CF002445

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211339250|gb|FL068790.1|FL068790

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|60339662|gb|DN206635.1|DN206635

EST:     GTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: GTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|91875205|gb|EB405162.1|EB405162

EST:     GGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: GGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|40337095|gb|CK371165.1|CK371165

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|31909989|gb|CD651196.1|CD651196

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211339253|gb|FL068793.1|FL068793

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

EST: gi|211530341|gb|FL172604.1|FL172604

EST:     AGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATTGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTC
genomic: AGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCA-TGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTC

EST: gi|32863561|gb|CF003243.1|CF003243

EST:     AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 39 (upstream exon), 49 (downstream exon)
Score: 342

ATGAATGTGGAGAAGCTCAAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG

Block sizes: 39 (upstream exon), 49 (downstream exon)
Score: 394

ATGAATGTGGAGAAGCTCAAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG

Block sizes: 39 (upstream exon), 49 (downstream exon)
Score: 416

ATGAATGTGGAGAAGCTCAAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG

Block sizes: 39 (upstream exon), 49 (downstream exon)
Score: 294

ATGAATGTGGAGAAGCTCAAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatc ... atgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

gcttctggacccatagtcccatgctaacaatttatgagggaaaaaatgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG

                     tgctaac  putative branch site (score: 294)
                        taacaatttat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caccgaagccttttgcgtttgtgatatgatatgttttattgagttgcttctggacccatagtcccatgctaacaatttatgagggaaaaaatgctgacagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG

Data associated with selected splice site

Sequence

Basic information

Orthologous splice sites

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

RNA-Seq data

Putative cis-regulatory sequences