1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atttcctgttgaactgttgccatgtaacaggaatggttgagatgctatttggggtggcttccatcgcttacaatttacatgcccctatgactatctgcagGAAATCCAAACAGGATAATGCAGTGGTTTGGCCACTTTGCTGTTACTGGGGAATCCACACATAGAAAGGGAGCTAAGGCACTTTCGCAGTTTGCGTTTGT
species | Zea mays |
transcript | GRMZM2G041847_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGGTCTATTCTAGCAAGAAAAGGCCATATACTGGAGGATTTCTTCCGAG GAAATCCAAACAGGATAATGCAGTGGTTTGGCCACTTTGCTGTTACTGGGGEST: gi|78073564|gb|DV501998.1|DV501998
genomic: TGGGTCTATTCTAGCAAGAAAAGGCCATATACTGGAGGATTTCTTCCGAGgtaattttcc ... ctatctgcagGAAATCCAAACAGGATAATGCAGTGGTTTGGCCACTTTGCTGTTACTGGGG
EST: TGGGTCTATTCTAGCAAGAAAAGGCCATATACTGGAGGATTTCTTCCGAG GAAATCCAAACAGGATAATGCAGTGGTTTGGCCACTTTGGCTGT-ACTGGG
genomic: TGGGTCTATTCTAGCAAGAAAAGGCCATATACTGGAGGATTTCTTCCGAGgtaattttcc ... ctatctgcagGAAATCCAAACAGGATAATGCAGTGGTTTGGCCACTTTG-CTGTTACTGGG
tatttggggtggcttccatcgcttacaatttacatgcccctatgactatctgcagGAAATCCAAACAGGATAATGCAGTGGTTTGGCCACTTTGCTGTTACTGGGGAATCCACACATAGAAAGGGAGCTAAGGCACTTTCGCAGTTTGCGTTTGT
cgcttac putative branch site (score: 31)
ttacaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcctgttgaactgttgccatgtaacaggaatggttgagatgctatttggggtggcttccatcgcttacaatttacatgcccctatgactatctgcagGAAATCCAAACAGGATAATGCAGTGGTTTGGCCACTTTGCTGTTACTGGGGAATCCACACATAGAAAGGGAGCTAAGGCACTTTCGCAGTTTGCGTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - cctgttg
- - - - - - -ctgttgc
- - - - - - - - - - catgtaa
- - - - - - - - - - - - - - - - atggttg
- - - - - - - - - - - - - - - - - - - - gatgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc