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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcaaacgtcggtgaatgatatgccatggttatttgttttgaactcctttacatatgttttcatacaagaaaagggtaagcatgaaaatctttgtatgcacagGTTCACCACTCAATCCACCAACGCCTGTTGGCACATGCCGCTATGACAATTCACTAG

Basic information

species Zea mays
transcript GRMZM2G041701_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G041701_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g33430.2 (Oryza sativa), 3'ss of exon 1
gtgagtgcaaacgtcggtgaatgatatgccatggttatttgttttgaactcctttacatatgttttcatacaagaaaagggtaagcatgaaaatctttgtatgcacagGTTCACCACTCAATCCACCAACGCCTGTTGGCACATGCCGCTATGACAATTCACTAG
                        ||||   |  |  | | | | |   |  | |   | |||| |     | ||| |   ||| |||| | || ||  | |  |||||||||||||| ||||| ||||| |||||||| |||||||| ||||||| |||  |||
-----------------------gtatgt-gtaatcttctttctagtcattttctctgtgtgttatgtcgtatgaacaat-taaacatgcatattttc-tgtttacagGTTCACCACTTAATCCCCCAACTCCTGTTGGTACATGCCGTTATGACAGTTCGTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101396632|gb|EB820241.1|EB820241
EST:     AAAGGCTAAGAACAGTAAAACTGGGCCTCAGACACCTACATCAAATGTTG                         GTTCACCACTCAATCCACCAACGCCTGTTGGCACATGCCGCTATGACAATT
genomic: AAAGGCTAAGAACAGTAAAACTGGGCCTCAGACACCTACATCAAATGTTGgtgagtgcaa ... gtatgcacagGTTCACCACTCAATCCACCAACGCCTGTTGGCACATGCCGCTATGACAATT
EST: gi|71427665|gb|DR808715.1|DR808715
EST:     AAAGGCTAAGAACAGTAAAACTGGGCCTCAGACACCTACATCAAATGTTG                         GTTCACCACTCAATCCACCAACGCCTGTTGGCACATGCCGCTATGACAATT
genomic: AAAGGCTAAGAACAGTAAAACTGGGCCTCAGACACCTACATCAAATGTTGgtgagtgcaa ... gtatgcacagGTTCACCACTCAATCCACCAACGCCTGTTGGCACATGCCGCTATGACAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatatgttttcatacaagaaaagggtaagcatgaaaatctttgtatgcacagGTTCACCACTCAATCCACCAACGCCTGTTGGCACATGCCGCTATGACAATTCACTAG
                                        tctttgt  CT-rich tract
                                    aaaatcttt  TA-rich tract