1 5' 3' | 2 5' 3' | 3 5' 3' |
...tagtgagtagaccaaaacaggaagagctaaaaggttggctatgtaataactaataagacaaagttgtagatatgttatttatttgtattattttctgcagGCTACGCCACTTATAGCGGGACTTGCAATTGCAGCAACTGCCCTTGCTGGCCGATATGGCGTCCAAGCTTGGCAAGCTTATAAGGCAAGGCCTATAGTTC
species | Zea mays |
transcript | GRMZM2G040587_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATCCGCCGCATTTCTGCCGACTTGGCCGGATTGGTCGCTTATTGAGATG GCTACGCCACTTATAGCGGGACTTGCAATTGCAGCAACTGCCCTTGCTGGCEST: gi|211019336|gb|FL371823.1|FL371823
genomic: ACTCCGCCGCATTTCTGCCGACTTGGCCGGATTGGTCGCTTATTGAGATGgtacgttgta ... ttttctgcagGCTACGCCACTTATAGCGGGACTTGCAATTGCAGCAACTGCCCTTGCTGGC
EST: ACTCCGCCGCATTTCTGCCGACTTGGCCGGATTGGTCGCTTATTGAAATG GCTACGCCACTTATAGCAGGACTTGCAGTTGCAGCAACTGCTCTTGCTGGTEST: gi|47962372|gb|CN845081.1|CN845081
genomic: ACTCCGCCGCATTTCTGCCGACTTGGCCGGATTGGTCGCTTATTGAGATGgtacgttgta ... ttttctgcagGCTACGCCACTTATAGCGGGACTTGCAATTGCAGCAACTGCCCTTGCTGGC
EST: ACTCCGCCGCATTTCTGCCGACTTGGCCGAATTGGTCGCTTATTGAGATG GCTACGCCACTTATAGCAGGACTTGCAGTTGCAGCAACTGCTCTTGCTGGT
genomic: ACTCCGCCGCATTTCTGCCGACTTGGCCGGATTGGTCGCTTATTGAGATGgtacgttgta ... ttttctgcagGCTACGCCACTTATAGCGGGACTTGCAATTGCAGCAACTGCCCTTGCTGGC
ataactaataagacaaagttgtagatatgttatttatttgtattattttctgcagGCTACGCCACTTATAGCGGGACTTGCAATTGCAGCAACTGCCCTTGCTGGCCGATATGGCGTCCAAGCTTGGCAAGCTTATAAGGCAAGGCCTATAGTTC
ttattttct CT-rich tract
aaagttgtagatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgagtagaccaaaacaggaagagctaaaaggttggctatgtaataactaataagacaaagttgtagatatgttatttatttgtattattttctgcagGCTACGCCACTTATAGCGGGACTTGCAATTGCAGCAACTGCCCTTGCTGGCCGATATGGCGTCCAAGCTTGGCAAGCTTATAAGGCAAGGCCTATAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - accaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -agacaaa