1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaacgctttcaggagagaatgttctctcttgaccacttgatctataacagagaatatgaaagtaaaatatcttatatcatcaagcctttgaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG
species | Zea mays |
transcript | GRMZM2G040030_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|71332001|gb|DR802895.1|DR802895
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|24768158|gb|CA403287.1|CA403287
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: TGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|50328811|gb|CO523937.1|CO523937
genomic: TGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|71448580|gb|DR829630.1|DR829630
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|211027745|gb|FL190156.1|FL190156
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|60339980|gb|DN206953.1|DN206953
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: TGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|9732589|gb|BE511341.1|BE511341
genomic: TGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|93012048|gb|EB637568.1|EB637568
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|110204646|gb|EC886543.1|EC886543
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTTTGCGTCTATTEST: gi|71762702|gb|DR960639.1|DR960639
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTTTGCGTCTATTEST: gi|149097932|gb|EE183873.2|EE183873
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|74237689|gb|DT645603.1|DT645603
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|50328812|gb|CO523938.1|CO523938
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|21331512|gb|BQ486893.1|BQ486893
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|76020028|gb|DT947198.1|DT947198
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|21331511|gb|BQ486892.1|BQ486892
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTGCATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|78116265|gb|DV534652.1|DV534652
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|13149827|gb|BG320149.1|BG320149
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|19822212|gb|BQ048236.1|BQ048236
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|148964237|gb|EE015419.2|EE015419
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|60400506|gb|DN233313.1|DN233313
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|76010700|gb|DT937870.1|DT937870
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|148972170|gb|EE023041.2|EE023041
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|76292706|gb|DV032274.1|DV032274
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|148941605|gb|EC886544.2|EC886544
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|91053646|gb|EB164064.1|EB164064
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTTTGCGTTTATTEST: gi|67034400|gb|CO462950.1|CO462950
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|76011638|gb|DT938808.1|DT938808
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|76018464|gb|DT945634.1|DT945634
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|20336921|gb|BQ172551.1|BQ172551
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|71762888|gb|DR960825.1|DR960825
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|149010166|gb|EE041979.2|EE041979
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTTTGCGTCTATTEST: gi|148971030|gb|EE021866.2|EE021866
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|149097933|gb|EE183874.2|EE183874
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|76010827|gb|DT937997.1|DT937997
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|5761786|gb|AI966939.1|AI966939
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: TTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|9254931|gb|BE345399.1|BE345399
genomic: TTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|20208279|gb|BQ134368.1|BQ134368
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGCTATTCTGCGTCTATTEST: gi|76934209|gb|DV173767.1|DV173767
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|148972171|gb|EE023042.2|EE023042
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTEST: gi|211025293|gb|FL190146.1|FL190146
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATT
EST: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAG AGGAGAGGTGGGGAAATGGATTGCG
genomic: GTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggc ... gaattttcagAGGAGAGGTGGGGAAATGGATTGCG
taacagagaatatgaaagtaaaatatcttatatcatcaagcctttgaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG
ctataac putative branch site (score: 387)
ttttc putative PPT
aatatgaaagtaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacgctttcaggagagaatgttctctcttgaccacttgatctataacagagaatatgaaagtaaaatatcttatatcatcaagcctttgaattttcagAGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaaa