1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcgtcagctgagttcatcgagtgctattggtgaacaccccaccccacccaattattgttaaattaatgctgacatggttcatacgacattaaaattgcagGGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGTTTAGGATATGCAACTGA
species | Zea mays |
transcript | GRMZM2G040017_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCAT GGATTGATTTTCCTTTTCAGCATGCTAGGAAATA-CACCTTTAGCTGAGCGEST: gi|71769706|gb|DR967643.1|DR967643
genomic: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCATgtaagtgctg ... aaaattgcagGGATTGATTTTCCTTTTCAGCATGCTAGGAA-TAACACCTTTAGCTGAGCG
EST: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCAT GGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGTEST: gi|149075133|gb|EE163627.2|EE163627
genomic: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCATgtaagtgctg ... aaaattgcagGGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGT
EST: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCAT GGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGTEST: gi|149072532|gb|EE160814.2|EE160814
genomic: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCATgtaagtgctg ... aaaattgcagGGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGT
EST: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCAT GGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGTEST: gi|89760510|gb|DY688889.1|DY688889
genomic: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCATgtaagtgctg ... aaaattgcagGGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGT
EST: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCAT GGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGTEST: gi|91867362|gb|EB399659.1|EB399659
genomic: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCATgtaagtgctg ... aaaattgcagGGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGT
EST: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCAT GGATTGATTTTCCTTTTCAEST: gi|149085154|gb|EE174658.2|EE174658
genomic: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCATgtaagtgctg ... aaaattgcagGGATTGATTTTCCTTTTCA
EST: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCAT GGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGT
genomic: TGCCGTTCGGGCCTGCGTCCATCATTCTCCACTTCACGACTAGGAGGCATgtaagtgctg ... aaaattgcagGGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGT
acccaattattgttaaattaatgctgacatggttcatacgacattaaaattgcagGGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGTTTAGGATATGCAACTGA
tgctgac putative branch site (score: 86)
attattgttaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtcagctgagttcatcgagtgctattggtgaacaccccaccccacccaattattgttaaattaatgctgacatggttcatacgacattaaaattgcagGGATTGATTTTCCTTTTCAGCATGCTAGGAATAACACCTTTAGCTGAGCGTTTAGGATATGCAACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA