Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgcctgcctgcccccgggccggccgatcgatccgtgcgcggtcgtgccgcatcgtagcgtaggaatgtgctagtagcaacacgatcgaatggcttggggattcacatgtctgcgccgctgctgcccctggctgcctgactcgcctgcttgtgcatcgatcagATCGGCACCAGCGGCGGCAGGTTGAGGCGGGCGCCGACAGAGGCAAAGCTCAAGGTGGCCATGAACGGGTTCGGTCGCATCGGGCGTAACTTGATGCGGT

Basic information

species Zea mays
transcript GRMZM2G039723_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039723_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g38600.2 (Oryza sativa), 3'ss of exon 2
gtacgtgcctgcctgcccccgggccggccgatcgatccgtgcgcggtcgtgccgcatcgtagcgtaggaatgtgctagtagcaacacgatcgaatggcttggggattcacatgtctgcgccgc-tgc-tgcccctggctgcctgactcgcctgcttgtgcatcgatcagATCGGCACCAGCGGCGGCAGGTTGAGGCGGGCGCCGACAGAGGCAAAGCTCAAGGTGGCCATGAACGGGTTCGGTCGCATCGGGCGTAACTTGATGCGGT---
                                                                   | | ||||  | |||||  | | || |   |||  |      | |    ||| ||  ||| || | | || ||    | |    || ||| |    |  ||| | ||||| ||||||||   |  | ||||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||  ||||||   
-------------------------------------------------------------------gtacgtgcgtgaagcaatgc-accggaaaacttttgttgcgtcgtcgaggcggcgtgtgcgtgacgcggggtgttgaagtt-tgtg-ttgcggcgggcgcagGTTGGCACGAGCGGCGG---GGCGCGGCGGGCGCCGACGGAGGCGAAGCTGAAGGTGGCGATCAACGGGTTCGGCCGCATCGGGCGCAACTTCCTGCGGTGCT

upper sequence: GRMZM2G039723_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g38600.1 (Oryza sativa), 3'ss of exon 2
gtacgtgcctgcctgcccccgggccggccgatcgatccgtgcgcggtcgtgccgcatcgtagcgtaggaatgtgctagtagcaacacgatcgaatggcttggggattcacatgtctgcgccgc-tgc-tgcccctggctgcctgactcgcctgcttgtgcatcgatcagATCGGCACCAGCGGCGGCAGGTTGAGGCGGGCGCCGACAGAGGCAAAGCTCAAGGTGGCCATGAACGGGTTCGGTCGCATCGGGCGTAACTTGATGCGGT
                                                                   | | ||||  | |||||  | | || |   |||  |      | |    ||| ||  ||| || | | || ||    | |    || ||| |    |  ||| | ||||| ||||||||   |  | ||||||||||||| ||||| ||||| |||||||| || ||||||||||| |||||||                  
-------------------------------------------------------------------gtacgtgcgtgaagcaatgc-accggaaaacttttgttgcgtcgtcgaggcggcgtgtgcgtgacgcggggtgttgaagTT-TGTG-TTGCGGCGGGCGCAGGTTGGCACGAGCGGCGG---GGCGCGGCGGGCGCCGACGGAGGCGAAGCTGAAGGTGGCGATCAACGGGTTCGGCCGCATCG------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgcgccgctgctgcccctggctgcctgactcgcctgcttgtgcatcgatcagATCGGCACCAGCGGCGGCAGGTTGAGGCGGGCGCCGACAGAGGCAAAGCTCAAGGTGGCCATGAACGGGTTCGGTCGCATCGGGCGTAACTTGATGCGGT
                         gcctgac  putative branch site (score: 3)