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...gcttctgaattactggctatatgtacttttttagtaaaaaaagaaacctggatgcaaatcactcccttttatttcttatgagattgtattttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA
species | Zea mays |
transcript | GRMZM2G039325_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|211231947|gb|FL170987.1|FL170987
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAA-CTCAAGCTGACEST: gi|71444483|gb|DR825533.1|DR825533
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGAC
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|211453386|gb|FL460028.1|FL460028
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|211234007|gb|FL171000.1|FL171000
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAAACTCA-GCTGACAGAATCEST: gi|149113193|gb|EE295942.2|EE295942
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAA-CTCAAGCTGACAGAATC
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|211415054|gb|FL462009.1|FL462009
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|148943243|gb|EC888304.2|EC888304
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|148967769|gb|EE019046.2|EE019046
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|76930993|gb|DV172583.1|DV172583
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|71444482|gb|DR825532.1|DR825532
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|71439208|gb|DR820258.1|DR820258
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
genomic: TACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAGgtaatcccca ... ttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
acctggatgcaaatcactcccttttatttcttatgagattgtattttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA
ttttgat putative branch site (score: 166)
ttttatttcttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttctgaattactggctatatgtacttttttagtaaaaaaagaaacctggatgcaaatcactcccttttatttcttatgagattgtattttgatggcagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
gcttctg
- - - - - tactggc
- - - - - - - - - atatgta
- - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - tggatgc