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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acgagagaaatagccaatacgtaagagcatgagtatctgatgtatgtactgtactctaatcaggagaagcgaaaactaattcagcgcatttttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG

Basic information

species Zea mays
transcript GRMZM2G039263_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039263_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g46620.1 (Oryza sativa), 3'ss of exon 2
acgagagaaatagccaatacgtaagagcatgagtat-ctgatgtatgtactgtactctaatcaggagaagcgaaaactaattcagcgcatttttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG
|  |  ||| |      ||  | ||  |   |  |  |  ||   || |   | |   ||    |    |    | |||||| |||  ||  |||||  ||||||| ||||| ||||||||||||||||| || || |||||||||||||||||  | | |||||||||||| ||||||||||| ||||||
attaatgaagttagacttagatcagttctgcaccacaccaatccctg-ataattccaaaaggttggctggaatgagctaattgagcatatccttcttgtagATGCTTGTGGATGATATTGGTGATGTTACCATAACAAATGATGGAGCAACCATTTTGAGGATGTTGGAAGTCGAGCATCCAGCAGCCAAG

upper sequence: GRMZM2G039263_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv15s0021g02230.t01 (Vitis vinifera), 3'ss of exon 2
acgagagaaatagccaatacgtaa--gagcatgagtatctgatgtatgtact-gtactctaatcaggagaagcgaaaactaattcagcgcatttttc-ttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG
      |  |  |   ||   |||  |      ||  | | |  | ||| || |||      |       | |    ||| ||   |  ||||  |  || |||||||| || || |||||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||||||||||||| ||||||
----ttggcagtgtgcatttttaattggttgcaaggttttaacttctgtgcttgtaagagtgttttatacaccctgtacttatgttgttcattgatgatttcagATGCTGGTTGATGATATTGGTGATGTAACAATTACTAATGATGGTGCTACAATACTCAAGATGTTGGAAGTTGAGCATCCAGCTGCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211378059|gb|FL215190.1|FL215190
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|6021928|gb|AW066856.1|AW066856
EST:     CGGNGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243917|gb|FL215137.1|FL215137
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250615|gb|FL215178.1|FL215178
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211380719|gb|FL215213.1|FL215213
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211383349|gb|FL215222.1|FL215222
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211246157|gb|FL215157.1|FL215157
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250617|gb|FL215180.1|FL215180
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211380718|gb|FL215212.1|FL215212
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|149010855|gb|EE042239.2|EE042239
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250616|gb|FL215179.1|FL215179
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211248384|gb|FL215161.1|FL215161
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250625|gb|FL215188.1|FL215188
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211378064|gb|FL215195.1|FL215195
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211248396|gb|FL215173.1|FL215173
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243918|gb|FL215138.1|FL215138
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211248392|gb|FL215169.1|FL215169
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250618|gb|FL215181.1|FL215181
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211383350|gb|FL215223.1|FL215223
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211246150|gb|FL215150.1|FL215150
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211490021|gb|FL368148.1|FL368148
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211380720|gb|FL215214.1|FL215214
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211383352|gb|FL215225.1|FL215225
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250619|gb|FL215182.1|FL215182
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211246155|gb|FL215155.1|FL215155
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211378070|gb|FL215201.1|FL215201
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211380714|gb|FL215208.1|FL215208
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243914|gb|FL215134.1|FL215134
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211378058|gb|FL215189.1|FL215189
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243916|gb|FL215136.1|FL215136
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211246156|gb|FL215156.1|FL215156
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|21331562|gb|BQ486943.1|BQ486943
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGCGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250620|gb|FL215183.1|FL215183
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211380710|gb|FL215204.1|FL215204
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211248391|gb|FL215168.1|FL215168
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211378072|gb|FL215203.1|FL215203
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243920|gb|FL215140.1|FL215140
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250611|gb|FL215174.1|FL215174
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243922|gb|FL215142.1|FL215142
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211380723|gb|FL215217.1|FL215217
EST:     CGGTCGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211378069|gb|FL215200.1|FL215200
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|149083358|gb|EE172656.2|EE172656
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|149074901|gb|EE163349.2|EE163349
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211383347|gb|FL215220.1|FL215220
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211246147|gb|FL215147.1|FL215147
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211380721|gb|FL215215.1|FL215215
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|149000083|gb|EE037198.2|EE037198
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211248390|gb|FL215167.1|FL215167
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|60396669|gb|DN229537.1|DN229537
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211378066|gb|FL215197.1|FL215197
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250624|gb|FL215187.1|FL215187
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250622|gb|FL215185.1|FL215185
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211378065|gb|FL215196.1|FL215196
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243915|gb|FL215135.1|FL215135
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211241685|gb|FL215127.1|FL215127
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211248395|gb|FL215172.1|FL215172
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243923|gb|FL215143.1|FL215143
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250623|gb|FL215186.1|FL215186
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243912|gb|FL215132.1|FL215132
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211248385|gb|FL215162.1|FL215162
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|71437844|gb|DR818894.1|DR818894
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243910|gb|FL215130.1|FL215130
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243921|gb|FL215141.1|FL215141
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211378067|gb|FL215198.1|FL215198
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|31557915|gb|CD527127.1|CD527127
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250612|gb|FL215175.1|FL215175
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250613|gb|FL215176.1|FL215176
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211383348|gb|FL215221.1|FL215221
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211383351|gb|FL215224.1|FL215224
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211378068|gb|FL215199.1|FL215199
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211241686|gb|FL215128.1|FL215128
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211241684|gb|FL215126.1|FL215126
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211250614|gb|FL215177.1|FL215177
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211378062|gb|FL215193.1|FL215193
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTCGGTCTCGACWAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACAAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243911|gb|FL215131.1|FL215131
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211380713|gb|FL215207.1|FL215207
EST:     CGGTGRCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211243913|gb|FL215133.1|FL215133
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
EST: gi|211248389|gb|FL215166.1|FL215166
EST:     CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG                         ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC
genomic: CGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 867

TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 334

TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 406

TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 233

TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAGgtatgtgtac ... tttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactgtactctaatcaggagaagcgaaaactaattcagcgcatttttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG
                            aactaat  putative branch site (score: 233)
                                         catttttctt  putative PPT
                          aaaactaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acgagagaaatagccaatacgtaagagcatgagtatctgatgtatgtactgtactctaatcaggagaagcgaaaactaattcagcgcatttttcttacagATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- gagagaaa
- - - - - - - - - - - - gagcatg
- - - - - - - - - - - - - - - - - - - -atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa