1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgatcaaatcttgaagttgaacaatgttatttttcataacaaaactaagtgtctactttgctgagtgtttgcgctgtcccattttagCCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTCATAGAGAAATTTGGTGCCAAGGAAGAAGAAATAATTCTTTATGGACAAT
species | Zea mays |
transcript | GRMZM2G039214_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAG CCGAGTGAACACAATACTEST: gi|211425408|gb|FL239281.1|FL239281
genomic: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAGgtatgatcaa ... cccattttagCCGAGTGAACACAATACT
EST: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAG CCGAGTGAACACAATACTTATGCTGACEST: gi|211422809|gb|FL239277.1|FL239277
genomic: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAGgtatgatcaa ... cccattttagCCGAGTGAACACAATACTTATGCTGAC
EST: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAG CCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTCEST: gi|211425406|gb|FL239279.1|FL239279
genomic: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAGgtatgatcaa ... cccattttagCCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTC
EST: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAG CCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTCEST: gi|160481624|gb|EY254456.1|EY254456
genomic: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAGgtatgatcaa ... cccattttagCCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTC
EST: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAG CCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTCEST: gi|211425405|gb|FL239278.1|FL239278
genomic: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAGgtatgatcaa ... cccattttagCCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTC
EST: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAG CCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTCEST: gi|211425407|gb|FL239280.1|FL239280
genomic: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAGgtatgatcaa ... cccattttagCCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTC
EST: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAG CCGAGTGAACACAATACTTATGCTGACATEST: gi|149076908|gb|EE165564.2|EE165564
genomic: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAGgtatgatcaa ... cccattttagCCGAGTGAACACAATACTTATGCTGACAT
EST: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAG CCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTCEST: gi|94475263|gb|EB704221.1|EB704221
genomic: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAGgtatgatcaa ... cccattttagCCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTC
EST: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAG CCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTC
genomic: GTATGACTATTCAGGATATGGGCAATCATCAGGAAAGgtatgatcaa ... cccattttagCCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTC
ttcataacaaaactaagtgtctactttgctgagtgtttgcgctgtcccattttagCCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTCATAGAGAAATTTGGTGCCAAGGAAGAAGAAATAATTCTTTATGGACAAT
tcataac putative branch site (score: 85)
tcccatttt putative PPT
aaaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatcaaatcttgaagttgaacaatgttatttttcataacaaaactaagtgtctactttgctgagtgtttgcgctgtcccattttagCCGAGTGAACACAATACTTATGCTGACATAGAGGCAGCTTACAAGTGCCTCATAGAGAAATTTGGTGCCAAGGAAGAAGAAATAATTCTTTATGGACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA