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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctcaatagatttttaatgacgaataattataaacaggaaatatgttatctcgttcatgcctaataatttctttatggtatcctgtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT

Basic information

species Zea mays
transcript GRMZM2G038791_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038791_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g03540.1 (Oryza sativa), 3'ss of exon 2
-cctcaata-gatttttaatgacgaataattataaacaggaaatatgttatctcgttcatgcctaataatttctttatggtatcctgtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT
   | | |  || || | |  |  |  | || |    |   |||   | |||||     |||| ||  |       |   | || |||  | ||||   ||||| |||||||||||||||||  |||||||||||||||| | |||||| |||||||||||||| ||||||||||||||||| |||||||| ||| |||| |
atttaagtgtgacttgttacaagtagcacttgtttg-actgaatggttaatctcaca-gtgccaaactaagatggaagtttttcttgttgtcttatctgcagGAAATAGCAAGTTACTTGGGCTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTTACAAGAAAGCGTAAGGGGAT

upper sequence: GRMZM2G038791_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA07G12660.1 (Glycine max), 3'ss of exon 2
cctcaatagatttttaatgacgaataattataaac--aggaaatatgttatctcgttcatgcctaataatttctttatggtatcctgtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT
  | |||| | ||||| | |  |||| ||  |  |  | |  |||   ||  | ||   |   || | | |    | |   ||  || || | | | |  |||| || ||| | ||| |||| || || || || || |  |  |||||| | |||||||||||||| |||||||| ||| ||||||| |||||  |||| |
-ttgaatatacttttatttattaatatttgaagtcttatgttatacagtagatagtctttaattatttactgaaatgtttgatt-tgcatgtatttaagtagGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAACTAAGATAAAGCGTTTTGCTGATGGTGAGATATATGTCCAGCTGCAAGAGAGTGTCAGGGGGT

upper sequence: GRMZM2G038791_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G06110.1 (Glycine max), 3'ss of exon 2
cctcaatagatttttaatgacgaataattataaacaggaaatatgttatctcgttcatgcctaataatttctttatggtatc---ctgtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT
  |   | ||| |  ||| |  | |   ||||    |    | | ||     | |  |   |  | | || | |  | | ||   | || ||  | |||  |||| || ||  | ||| |||| || |||||||| |||||  |||| ||| | ||||||||||||||||| ||||| ||||| ||||| |||||  | || |
-gttgcttgatataaaataa--agttggtatatggtgtctttttattgggctggttttatttgttgagttttgtgggttttctaaccgtgttgctttgattagGAAATTGCTCGGTACATGGGCCTGGAACTTGGAAAGATTTCCATCAAGCGATTTGCTGATGGTGAAATCTATGTCCAGTTACAAGAGAGTGTTAGAGGTT

upper sequence: GRMZM2G038791_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA03G24280.2 (Glycine max), 3'ss of exon 2
cctcaatagatttttaatgacgaataattataaacaggaaatatgttat---ctcgttcatgcctaataatttctttatggt---atcctgtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT
    |||| | ||||  ||   | ||||  |  |   |   ||||||||   |  | |  |  ||||| ||||||  |  ||   ||  || || | | | |  |||| || ||| | ||| |||| || || || || || || |  |||||| | |||||||||||||| |||||||| ||| ||||||| |||||  |||| |
----aatatacttttgttgtttattaatatttga--agtcttatgttatacaccagatagtctctaattatttctgaaatgtttgattttgcatgtatttaagtagGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAATTAAGATAAAGCGTTTTGCTGATGGTGAGATATATGTCCAGCTGCAAGAGAGTGTCAGGGGGT

upper sequence: GRMZM2G038791_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA17G16400.3 (Glycine max), 3'ss of exon 2
cctcaatagatttttaatgacgaataattataaacaggaaatatgttatctcgttcatgcctaataatttctttatggtatcct----gtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT
  |   | | | |  ||| | |      ||||  | |    | | ||     | |  |   |  | | || | | |||| | ||    ||| |  | |||  |||| || ||  | ||| |||| || ||||| || |||||  |||| ||| | ||||||||||||||||||||||| ||||| ||||| |||||  | || |
--tttgtggctataaaattaagttagtatatatgctgtctttttattgggctggtt-tttttgttgagttttgt-tggttttctaacggtaatggtttgattagGAAATTGCTCGGTACATGGGCCTGGAACTCGGAAAGATTTCCATCAAGCGATTTGCTGATGGTGAAATATATGTCCAGTTACAAGAGAGTGTTAGAGGTT

upper sequence: GRMZM2G038791_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G32380.1 (Arabidopsis thaliana), 3'ss of exon 2
cctcaatagatttttaatgacgaataattataaacaggaaatatgttatctcgttcatgcctaataatttctttatggtatcctgtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT
      ||| ||| |   |||   |  || |       ||  | ||| ||   |||  |   | ||  | ||  |     || || | |||| |||  |||| || ||  | ||  |||| || || ||||||||| | | ||||||||| ||||||||||| || || ||||||||| |  ||||||||||  | || |
-----gtagttttctcgagacctttggttgtcttttttaatcaagttttc---ttctggtgaagtatatgctaaac----tcttggaattttgtga--agGAAATTGCTTGGTATATGGGTCTGGAGCTTGGGAAGGTTAGCATAAAGAGATTTGCTGATGGAGAGATCTATGTTCAGCTCAAAGAAAGTGTTAGAGGTT

upper sequence: GRMZM2G038791_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv02s0012g00530.t01 (Vitis vinifera), 3'ss of exon 2
-cctcaatagatttttaatgacgaataattataaacaggaaatatgttatctcgttcatgcctaataatttctttatggtatc-ctgtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT
 | ||      ||| ||||   |  |  || ||       ||| | || | |    ||     ||  || | |||      || |||   |||  |    |||| || ||  | ||| ||||    || || || ||||| | ||||||||||||||||||||||||||| |||||||||||| |||| |||||  | || |
ccttcttcttctttataatt-tggttctttttactgtatgaattttttgt-taaaacacttggaaccatatgtttgcctgctcactgccatttgtttcctagGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGTTTGCTGATGGTGAAATTTATGTTCAGTTGGAAGAGAGTGTTAGAGGGT

upper sequence: GRMZM2G038791_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv15s0021g00460.t01 (Vitis vinifera), 3'ss of exon 2
--cctcaatagatttttaatgacgaataattataaacaggaaatatgttatctcgttcatgcctaataatttctttatggtatcctgtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT
    |   |  || |||  |      |  || | |     || | | |   |     | |     ||   |  ||  || |      |  | ||      |||| || ||| | ||| |||| || || || || || |||| ||||||  | ||||||||||| || || ||||||||||||||||| |||||  | || |
actttttgtgcatgtttttttttttttttttttcat--acaagtgtttctcccatgaccttttgtatgtgtcattcctgatgcataattatgtttgttgtagGAAATTGCATGCTACATGGGCCTGGAGCTGGGAAAAATAAACATAAAACGCTTTGCTGATGGAGAGATTTATGTTCAGTTGCAAGAGAGTGTTAGAGGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211385414|gb|FL420190.1|FL420190
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAA
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAA
EST: gi|76014853|gb|DT942023.1|DT942023
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211263544|gb|FL369199.1|FL369199
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211116188|gb|FL414274.1|FL414274
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211452034|gb|FL391255.1|FL391255
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211434346|gb|FL408461.1|FL408461
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|148941796|gb|EC886762.2|EC886762
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211054424|gb|FL403423.1|FL403423
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211434262|gb|FL404594.1|FL404594
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATMGCAAGTTACCTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211153468|gb|FL403833.1|FL403833
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAA
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAA
EST: gi|211027831|gb|FL421234.1|FL421234
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|71429936|gb|DR810986.1|DR810986
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211263862|gb|FL390542.1|FL390542
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211382027|gb|FL388794.1|FL388794
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211032752|gb|FL421264.1|FL421264
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCYAGTTACTTGGGGCTAGAACYTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211039333|gb|FL381586.1|FL381586
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|76914467|gb|DV165542.1|DV165542
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|76015091|gb|DT942261.1|DT942261
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|94476090|gb|EB705048.1|EB705048
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|78118884|gb|DV537268.1|DV537268
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAA                         GAGATAGAAAGTTACTTGGGGCTAAAACTTGAAAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211363353|gb|FL393789.1|FL393789
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|91052224|gb|EB162642.1|EB162642
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211535950|gb|FL381083.1|FL381083
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|78120522|gb|DV538906.1|DV538906
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211288221|gb|FL395058.1|FL395058
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211528099|gb|FL426876.1|FL426876
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|71771273|gb|DR969210.1|DR969210
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|149077159|gb|EE165820.2|EE165820
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|74243300|gb|DT651214.1|DT651214
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211065807|gb|FL399353.1|FL399353
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211066796|gb|FL430459.1|FL430459
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|148965187|gb|EE015993.2|EE015993
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211461834|gb|FL417620.1|FL417620
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|101391941|gb|EB817900.1|EB817900
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211009203|gb|FL416027.1|FL416027
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATACCCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211311593|gb|FL416728.1|FL416728
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211127258|gb|FL371847.1|FL371847
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211451624|gb|FL374376.1|FL374376
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|31354058|gb|CD438415.1|CD438415
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211140507|gb|FL400407.1|FL400407
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAA-ATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|148931525|gb|EC874574.2|EC874574
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211169679|gb|FL404311.1|FL404311
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|211497336|gb|FL428227.1|FL428227
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
EST: gi|101393322|gb|EB818592.1|EB818592
EST:     ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAG                         GAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG
genomic: ACACGAGGCTGCGCATCTTCTCAGGCACAGCCAATCCTTCCCTTTCCCAGgtcagttgag ... ttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatctcgttcatgcctaataatttctttatggtatcctgtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT
             gcctaat  putative branch site (score: 3)
                                        tattttt  putative PPT
                taataatttctttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cctcaatagatttttaatgacgaataattataaacaggaaatatgttatctcgttcatgcctaataatttctttatggtatcctgtatttttatgaacagGAGATAGCAAGTTACTTGGGGCTAGAACTTGGGAAGATAACCATAAAGAGGTTTGCTGATGGTGAAATATATGTTCAGTTGCAAGAAAGTGTACGGGGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA