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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtcatctgtaagctgcagcatgattgctgctttacattcttatattccaaatttccaatgctataaacttatctaatctattgccaactgtttatacagACCTGCTATATCGCTTTGCTTATTATCTATATTCATCAAAGCATCTATTTGATCATAATGTTAAAAGCGCGGGCAAGTTTCTAGTGCTTATCATTTGCCC

Basic information

species Zea mays
transcript GRMZM2G038667_T04
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396179|gb|DN229048.1|DN229048
EST:     GATAGCACAATCCTCTACTGGTTCATTCCTGGACTACCGGTGGTAATCTG                         ACCTGCTATATCGCTTTGCTTATTATCTATATTCATCAAAGCATCTATTTG
genomic: GATAGCACAATCCTCTACTGGTTCATTCCTGGACTACCGGTGGTAATCTGgtaatcctac ... gtttatacagACCTGCTATATCGCTTTGCTTATTATCTATATTCATCAAAGCATCTATTTG
EST: gi|149046658|gb|EE048047.2|EE048047
EST:     GATAGCACAATCCTCTACTGGTTCATTCCTGGACTACCGGTGGTAATCTG                         ACCTGCTATATCGCTTTGCTTATTATCTATATTCATCAAAGCATCTATTTG
genomic: GATAGCACAATCCTCTACTGGTTCATTCCTGGACTACCGGTGGTAATCTGgtaatcctac ... gtttatacagACCTGCTATATCGCTTTGCTTATTATCTATATTCATCAAAGCATCTATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccaaatttccaatgctataaacttatctaatctattgccaactgtttatacagACCTGCTATATCGCTTTGCTTATTATCTATATTCATCAAAGCATCTATTTGATCATAATGTTAAAAGCGCGGGCAAGTTTCTAGTGCTTATCATTTGCCC
                          atctaat  putative branch site (score: 3)
                 tataaacttatctaat  TA-rich tract