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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgaatctctcctttttctcgtccagttcccctcgcaataaacgcccccctgacgatccaatccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCCCAACCGCGCCGAAGCGGCCTGACCATCTCGTGCTCGGCCCCGCCGCCGG

Basic information

species Zea mays
transcript GRMZM2G038667_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93017014|gb|EB642534.1|EB642534
EST:     CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcgtccagttcccctcgcaataaacgcccccctgacgatccaatccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCCCAACCGCGCCGAAGCGGCCTGACCATCTCGTGCTCGGCCCCGCCGCCGG
                               ccctgac  putative branch site (score: 3)
                                             tccactcc  putative PPT
                    aataaa  TA-rich tract