Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG

Basic information

species Zea mays
transcript GRMZM2G038606_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 3'ss of exon 2
gtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG
    | | |  | |  |||  |     |    | ||| || ||| || | || || || || | ||   |||  ||| |     ||  |||   ||    | ||    | | ||||||||||||| ||||| || ||||| |||||||||||  |||| || ||||||||||||||||||||||| ||  |||||||||||||||||||||||
----gtaagagaagatccgccgcttcgcgctgtgcgtggtggttgtttg-gtttggtt-tctgatcgg-ctagggtttga---aacttttg---tgtggttttt----ttttagCTCGTGGAGCTTAAGAACGGCGAGACGTACAACGGGCACTTGGTGAACTGCGACACGTGGATGAACATCCACCTCCGGGAGGTTATTTGCACCTCAAAG

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G17430.1 (Glycine max), 3'ss of exon 2
gtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatct----cagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG
    |   || |   ||| |  || || || || |    |  |||||   |  |   |    |||      ||| |  ||   || | |||  || | ||| || |||| |    ||||| ||||| ||||| ||||| ||||| || ||||||||  |||| ||||| || || |||||||||||||||||  | || || ||||| ||||| || 
----gtgagtcaaaccccctgtgctttatttttaccctctttttttttagggttaccttattgtt------attatatgtgtagaac-ttgtgttaatactgtt-tgatttgtaacagCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACCTCTAAA

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G02380.1 (Glycine max), 3'ss of exon 2
gtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattg---tta-gtcctgaccg-ttgaattgaaactattgtgatct-----cagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG
     ||  |||   | | || || || ||  ||   | || |||||   |  |   |    |||  || ||| |   ||| ||    || | |||| ||| ||||  ||  || |     ||||| ||||| ||||| ||||| ||||| || ||||||||  |||| ||||| || || ||||||||||| |||||  | || || ||||| ||||| || 
---gtgagttaaaccctcttttgctttatt--tttaccctctttttttagggttacgttattgttatatgtatagaaattatgttaatactgcttgatttgtaacttgtgacatattgtaacagCTAGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATTCATCTCCGAGAAGTCATTTGTACCTCTAAA

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA19G39780.1 (Glycine max), 3'ss of exon 2
gtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG
        ||||   | | ||     | ||| |||    |  | ||||   ||| | |     ||     || | |  |   |||   | |   ||    |  ||| |   ||| | ||||| ||||| ||||| |||||||| ||||||||| |||| |||||||| || |||||||||||||||||  | || || ||||| || || || 
--------gtaa---ctcatt-----ttttcattctctattttctttgatttctaacttattattattattactat--gatatgatgatggtgatggtgatgatgtaa---cagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACATCTAAA

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA03G37170.2 (Glycine max), 3'ss of exon 2
gtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG
                     |    ||   |||| |  || | | |      | |||      | | | |  |  |  |  |||  ||    ||||   |  ||| |   ||| | ||||| ||||| ||||| |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||  | || || ||||| || || || 
---------------------gcaactcacttttcattctcttctct-----tttatttctaacttattattattatgatggtgatggtgatgttgatgatgatgtaa---cagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT5G27720.1 (Arabidopsis thaliana), 3'ss of exon 3
----gtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttt-tggcgtctgattctccgttc-------aatctattgttagtcc---tgaccgttgaattgaaact-attgtgatct--cagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG
    ||||       |       ||    || |  | |    |  ||      | || | | |   | ||         |||||  |  | | |   | || ||    ||||| ||  || || | |   ||||||||||||| |||||||| ||||||||||| |||||| |||| ||||| || || |||||||||||||||||  | || || || || || ||||||
gtgagtaaaatttcgacccttgattacaattttgttatatatgaagtgaagctgagtttaagtgagcattgcattagggatctaaaggaacttccttttactgtaattttgaatcttgttttgttttggtagCTCGTGGAGCTTAAGAATGGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATCCATCTGCGTGAAGTCATATGTACATCAAAG

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 4
--------gtaaggacgtaaggtcccgttg-gccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG
        | ||  | | |  | | || ||     | ||||||    ||      | || ||| |  || |||   | || |   |  | |||   ||           | |||||||   || | |||||||| || ||||| || || ||||| |||||| |||| || || || || ||||||||||| |||||| |||| ||||| || |||||||| 
cctcagatgaaaacaagcagagcctcgatgtaaaattttctttaagagt------tagcatctca--cttcgt--gacctgtaacttatactgcttgta----------tgttgtgat---agTTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ10085 (Selaginella moellendorffii), 3'ss of exon 1
gtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG-
                                                              ||      | || || ||      | |||  |  ||| |    ||     |||| |||||||| |||||||| ||||| ||||| |||||| |||| |  ||||| |  |||||||||||||||||  | || ||||||||||| || ||| 
--------------------------------------------------------------gtgagtgatgttcttcgtttccttctttgtctgaaaattcgcttgggt--agCTAGTGGAGCTCAAGAATGGAGAGACTTACAATGGGCATTTGGTGAGCTGCGATAGCTGGATGAACATCCATCTACGAGAAGTTATTTGCACTTCCAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211074698|gb|FL076203.1|FL076203
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533726|gb|FL071650.1|FL071650
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCC-ATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211536731|gb|FL071660.1|FL071660
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533729|gb|FL071653.1|FL071653
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077444|gb|FL076220.1|FL076220
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077445|gb|FL076221.1|FL076221
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077443|gb|FL076219.1|FL076219
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|78107776|gb|DV526194.1|DV526194
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077441|gb|FL076217.1|FL076217
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211536732|gb|FL071661.1|FL071661
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|94474355|gb|EB703313.1|EB703313
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCCGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533731|gb|FL071655.1|FL071655
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|32868742|gb|CF008424.1|CF008424
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211074699|gb|FL076204.1|FL076204
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGACATCTGGTCAATTG
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGG-CATCTGGTCAATTG
EST: gi|211074704|gb|FL076209.1|FL076209
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211074701|gb|FL076206.1|FL076206
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|31358015|gb|CD442372.1|CD442372
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533734|gb|FL071658.1|FL071658
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533732|gb|FL071656.1|FL071656
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|5343007|gb|AI795312.1|AI795312
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|89252869|gb|DY624655.1|DY624655
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCCGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077437|gb|FL076213.1|FL076213
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|32804245|gb|CD956481.1|CD956481
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|84970052|gb|DW468427.1|DW468427
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGGTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077438|gb|FL076214.1|FL076214
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077436|gb|FL076212.1|FL076212
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533730|gb|FL071654.1|FL071654
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211074703|gb|FL076208.1|FL076208
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211536733|gb|FL071662.1|FL071662
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533727|gb|FL071651.1|FL071651
EST:     CTTCCCCTCTCGCTCCTCAAAACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAAC-GCCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211074702|gb|FL076207.1|FL076207
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|78115516|gb|DV533904.1|DV533904
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533728|gb|FL071652.1|FL071652
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211536730|gb|FL071659.1|FL071659
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533733|gb|FL071657.1|FL071657
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGSCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077434|gb|FL076210.1|FL076210
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|32827249|gb|CD966927.1|CD966927
EST:     ACAATATGCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: ACAATATGCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211074700|gb|FL076205.1|FL076205
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|9952507|gb|BE639090.1|BE639090
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGATACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077442|gb|FL076218.1|FL076218
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|78115517|gb|DV533905.1|DV533905
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211536735|gb|FL071664.1|FL071664
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|76927712|gb|DV171333.1|DV171333
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATTTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG
                    tcctgac  putative branch site (score: 2)
       aatctatt  TA-rich tract