RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
48 (upstream exon),
12 (downstream exon)
Score:
21AATGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCATTGACTTCAGTACTGCTTCTCTTTGAGCTGACAAAGGATTACAGGATTTTGCTTCCTCTCATGgtaagtgtta ... cgtcgtgtagTGAACAAGGGAGAATATTATGAACTGAAGGTCATGTATCAGTGAAAAGCATGCTTTCCTCTTGTAGAAATTGTGCACTGAAAAACTACAGTGCCCTTATG
Block sizes:
48 (upstream exon),
18 (downstream exon)
Score:
19AATGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCATTGACTTCAGTACTGCTTCTCTTTGAGCTGACAAAGGATTACAGGATTTTGCTTCCTCTCATGgtaagtgtta ... cgtcgtgtagTGAACAAGGGAGAATATTATGAACTGAAGGTCATGTATCAGTGAAAAGCATGCTTTCCTCTTGTAGAAATTGTGCACTGAAAAACTACAGTGCCCTTATG
Block sizes:
48 (upstream exon),
18 (downstream exon)
Score:
13AATGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCATTGACTTCAGTACTGCTTCTCTTTGAGCTGACAAAGGATTACAGGATTTTGCTTCCTCTCATGgtaagtgtta ... cgtcgtgtagTGAACAAGGGAGAATATTATGAACTGAAGGTCATGTATCAGTGAAAAGCATGCTTTCCTCTTGTAGAAATTGTGCACTGAAAAACTACAGTGCCCTTATG
Block sizes:
42 (upstream exon),
8 (downstream exon)
Score:
13AATGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCATTGACTTCAGTACTGCTTCTCTTTGAGCTGACAAAGGATTACAGGATTTTGCTTCCTCTCATGgtaagtgtta ... cgtcgtgtagTGAACAAGGGAGAATATTATGAACTGAAGGTCATGTATCAGTGAAAAGCATGCTTTCCTCTTGTAGAAATTGTGCACTGAAAAACTACAGTGCCCTTATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttactatattttttgtttcacaacacataaacataagttatttccgtcgtgtagTGAACAAGGGAGAATATTATGAACTGAAGGTCATGTATCAGTGAAAAGCATGCTTTCCTCTTGTAGAAATTGTGCACTGAAAAACTACAGTGCCCTTATG
gtcttac putative branch site (score: 13)
ttatttcc putative PPT
ataaacataagttatt TA-rich tract
