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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtagcttggcctcagatctcgcgctgcaatttttttattgggattgggaaaaatgtttgtgctaaattcatgtcatggtggcgatgcccaatgtttatgctaaattcatgtcgtgatggcgatgcccacaacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATCGTGCCGGTCAATACCAACAAG

Basic information

species Zea mays
transcript GRMZM2G037698_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211398025|gb|FL052448.1|FL052448
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGTGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|26457390|gb|CA828973.1|CA828973
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|149082488|gb|EE171681.2|EE171681
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211398014|gb|FL052437.1|FL052437
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211395393|gb|FL052425.1|FL052425
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|31350321|gb|CD434678.1|CD434678
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211398013|gb|FL052436.1|FL052436
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211392771|gb|FL052416.1|FL052416
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211502075|gb|FL052463.1|FL052463
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211502066|gb|FL052454.1|FL052454
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211395397|gb|FL052429.1|FL052429
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGTGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211392764|gb|FL052409.1|FL052409
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211124460|gb|FL005599.1|FL005599
EST:     GCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: GCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211504415|gb|FL052464.1|FL052464
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211506780|gb|FL052483.1|FL052483
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211390140|gb|FL052400.1|FL052400
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211395402|gb|FL052434.1|FL052434
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211392763|gb|FL052408.1|FL052408
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211504416|gb|FL052465.1|FL052465
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211504420|gb|FL052469.1|FL052469
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211398015|gb|FL052438.1|FL052438
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211392766|gb|FL052411.1|FL052411
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|148956938|gb|EC902874.2|EC902874
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|148987120|gb|EE030948.2|EE030948
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211504425|gb|FL052474.1|FL052474
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211395400|gb|FL052432.1|FL052432
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|60397274|gb|DN230090.1|DN230090
EST:     GCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: GCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211504427|gb|FL052476.1|FL052476
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211392769|gb|FL052414.1|FL052414
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211395398|gb|FL052430.1|FL052430
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211504417|gb|FL052466.1|FL052466
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211502064|gb|FL052452.1|FL052452
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211398012|gb|FL052435.1|FL052435
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211392768|gb|FL052413.1|FL052413
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211125228|gb|FL005601.1|FL005601
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|148940045|gb|EC884788.2|EC884788
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211506776|gb|FL052479.1|FL052479
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211506777|gb|FL052480.1|FL052480
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCC-ATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211125241|gb|FL005614.1|FL005614
EST:     GCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: GCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211502068|gb|FL052456.1|FL052456
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211395399|gb|FL052431.1|FL052431
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211502063|gb|FL052451.1|FL052451
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211504428|gb|FL052477.1|FL052477
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211506781|gb|FL052484.1|FL052484
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211395391|gb|FL052423.1|FL052423
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211392761|gb|FL052406.1|FL052406
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATT-AG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211506782|gb|FL052485.1|FL052485
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211395401|gb|FL052433.1|FL052433
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGYCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211504424|gb|FL052473.1|FL052473
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211395395|gb|FL052427.1|FL052427
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211392774|gb|FL052419.1|FL052419
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211398022|gb|FL052445.1|FL052445
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211502071|gb|FL052459.1|FL052459
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACYATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211502073|gb|FL052461.1|FL052461
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|26456415|gb|CA827998.1|CA827998
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211502067|gb|FL052455.1|FL052455
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCCATCACCAAGGATGAGCTTACTATGGATGATAT
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCC-ATCACCAAGGATGAGCTTACTATGGATGATAT
EST: gi|211506778|gb|FL052481.1|FL052481
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211398023|gb|FL052446.1|FL052446
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|31354887|gb|CD439244.1|CD439244
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211398021|gb|FL052444.1|FL052444
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211125235|gb|FL005608.1|FL005608
EST:     GCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: GCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211395390|gb|FL052422.1|FL052422
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|149095787|gb|EE181433.2|EE181433
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|148958621|gb|EC904872.2|EC904872
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211502065|gb|FL052453.1|FL052453
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAA                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211504418|gb|FL052467.1|FL052467
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211398020|gb|FL052443.1|FL052443
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211125229|gb|FL005602.1|FL005602
EST:     GCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: GCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211392773|gb|FL052418.1|FL052418
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
EST: gi|211502061|gb|FL052449.1|FL052449
EST:     AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAG                         GACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC
genomic: AGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 397

TCTCCGGTGAGGTGCCGGACGAGCCGGTGGTGTCGAAGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATCGTGCCGGTCAATACCAACAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 190

TCTCCGGTGAGGTGCCGGACGAGCCGGTGGTGTCGAAGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATCGTGCCGGTCAATACCAACAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 221

TCTCCGGTGAGGTGCCGGACGAGCCGGTGGTGTCGAAGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATCGTGCCGGTCAATACCAACAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 172

TCTCCGGTGAGGTGCCGGACGAGCCGGTGGTGTCGAAGAAGTCGGGGCTTCTCTTCGAGCGGCGGCTCATCGAGCGCTACATTGAGgtccgtagct ... aacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATCGTGCCGGTCAATACCAACAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcccaatgtttatgctaaattcatgtcgtgatggcgatgcccacaacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATCGTGCCGGTCAATACCAACAAG
             tgctaaa  putative branch site (score: 172)
     aatgtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtccgtagcttggcctcagatctcgcgctgcaatttttttattgggattgggaaaaatgtttgtgctaaattcatgtcatggtggcgatgcccaatgtttatgctaaattcatgtcgtgatggcgatgcccacaacattgcagGACCATGGCAAGTGCCCCATCACCAAGGATGAGCTTACTATGGATGATATCGTGCCGGTCAATACCAACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT