Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4681093|gb|AI629763.1|AI629763EST: CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCT CTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
genomic: CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCTgtaagtctgc ... tccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
EST:
gi|166557136|gb|EG052959.1|EG052959EST: CTGGATCTCCATGGCT CTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
genomic: CTGGATCTCCATGGCTgtaagtctgc ... tccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
EST:
gi|12971716|gb|BG267621.1|BG267621EST: CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCT CTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
genomic: CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCTgtaagtctgc ... tccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accccttgttcattccgcttaacacctaatgacggaaacgtcttgtccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAGAACCTGTATCAGCCTAGCGCCGTTAACATACTCCAGCAGGTCGAGCAGC
acctaat putative branch site (score: 3)
cgtcttgtccctccc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtctgccgaaccatattttatacggctttggcctgaccccttgttcattccgcttaacacctaatgacggaaacgtcttgtccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAGAACCTGTATCAGCCTAGCGCCGTTAACATACTCCAGCAGGTCGAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG